Variant report

Variant	rs16922560
Chromosome Location	chr10:22941536-22941537
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22937664..22939892-chr10:22939931..22943485,3	MCF-7	breast:
2	chr10:22865070..22867317-chr10:22940531..22942326,2	MCF-7	breast:
3	chr10:22940458..22943239-chr10:22943736..22945993,2	K562	blood:
4	chr10:22938179..22940547-chr10:22940973..22943233,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10159697	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10159847	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10218845	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10508650	0.88[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10508651	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10828320	1.00[JPT][hapmap]
rs11013103	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11013105	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11013106	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11592199	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12098721	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12255136	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12257665	1.00[CHB][hapmap]
rs1624192	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1626919	0.80[CEU][hapmap];0.83[ASN][1000 genomes]
rs1631873	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16922488	0.90[YRI][hapmap]
rs16922529	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922530	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922539	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922564	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16922566	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16922578	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes]
rs16922580	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16922586	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1750759	1.00[ASN][1000 genomes]
rs17525760	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17526135	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1778302	1.00[JPT][hapmap]
rs1778317	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1778327	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1778352	1.00[CHD][hapmap]
rs35355312	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs45520040	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs45620939	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59403140	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61531925	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482227	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6482228	1.00[JPT][hapmap]
rs7071198	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs7075433	1.00[JPT][hapmap]
rs7075499	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7090286	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs7093543	0.94[GIH][hapmap]
rs7100490	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7900517	1.00[JPT][hapmap]
rs7902016	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909660	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7912144	0.89[GIH][hapmap]
rs7915780	0.88[AMR][1000 genomes]
rs7919243	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs7924019	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs997650	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22915000-22951800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:22927800-22942800	Enhancers	Brain Anterior Caudate	brain
3	chr10:22929600-22948400	Enhancers	Brain Cingulate Gyrus	brain
4	chr10:22932400-22944200	Weak transcription	Brain Germinal Matrix	brain
5	chr10:22933600-22944200	Weak transcription	Fetal Stomach	stomach
6	chr10:22934800-22942400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr10:22935000-22945400	Enhancers	Primary B cells from peripheral blood	blood
8	chr10:22935200-22953000	Enhancers	Brain Substantia Nigra	brain
9	chr10:22936400-22958000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:22936600-22942000	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr10:22936600-22943800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:22936800-22941800	Weak transcription	Esophagus	oesophagus
13	chr10:22936800-22944600	Weak transcription	Gastric	stomach
14	chr10:22936800-22944800	Enhancers	Primary B cells from cord blood	blood
15	chr10:22937000-22941800	Weak transcription	Aorta	Aorta
16	chr10:22937000-22944800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr10:22937400-22943200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr10:22937600-22944200	Weak transcription	NHLF	lung
19	chr10:22937800-22944400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr10:22937800-22947800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr10:22937800-22951200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr10:22937800-22955200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr10:22938000-22944600	Weak transcription	Fetal Heart	heart
24	chr10:22938200-22947800	Weak transcription	NH-A	brain
25	chr10:22938400-22942000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr10:22938400-22942800	Enhancers	Spleen	Spleen
27	chr10:22938400-22943200	Weak transcription	Fetal Kidney	kidney
28	chr10:22938600-22941800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr10:22938600-22943600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr10:22938600-22944200	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr10:22938600-22944200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr10:22938600-22944200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:22938600-22944200	Weak transcription	Stomach Mucosa	stomach
34	chr10:22938600-22944400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr10:22938600-22944400	Weak transcription	Osteobl	bone
36	chr10:22938800-22941600	Genic enhancers	Primary T cells fromperipheralblood	blood
37	chr10:22938800-22941600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr10:22938800-22941600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr10:22938800-22941600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
40	chr10:22938800-22942000	Genic enhancers	Brain Hippocampus Middle	brain
41	chr10:22938800-22942200	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr10:22938800-22942200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr10:22938800-22943400	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr10:22938800-22943400	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr10:22938800-22943600	Weak transcription	Fetal Lung	lung
46	chr10:22938800-22944200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr10:22938800-22944600	Weak transcription	Colonic Mucosa	Colon
48	chr10:22938800-22946800	Enhancers	Primary hematopoietic stem cells	blood
49	chr10:22938800-22949400	Weak transcription	HMEC	breast
50	chr10:22938800-22949600	Weak transcription	NHEK	skin

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