Variant report

Variant	rs16922488
Chromosome Location	chr10:22890372-22890373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22888870..22890376-chr10:22897120..22899767,2	MCF-7	breast:
2	chr10:22887097..22891017-chr10:22894744..22899143,5	K562	blood:
3	chr10:22883237..22885800-chr10:22888806..22890802,2	MCF-7	breast:
4	chr10:22887962..22890851-chr10:22904163..22906680,2	K562	blood:
5	chr10:22882953..22885596-chr10:22887639..22890414,2	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12261467	1.00[EUR][1000 genomes]
rs16922378	1.00[EUR][1000 genomes]
rs16922485	1.00[EUR][1000 genomes]
rs16922522	1.00[EUR][1000 genomes]
rs16922560	0.90[YRI][hapmap]
rs56977725	1.00[EUR][1000 genomes]
rs57618053	1.00[EUR][1000 genomes]
rs58483189	1.00[EUR][1000 genomes]
rs59155025	1.00[EUR][1000 genomes]
rs59543181	1.00[EUR][1000 genomes]
rs61219681	1.00[EUR][1000 genomes]
rs61443631	1.00[EUR][1000 genomes]
rs7096631	1.00[EUR][1000 genomes]
rs73598572	1.00[EUR][1000 genomes]
rs73598574	1.00[EUR][1000 genomes]
rs73598580	1.00[EUR][1000 genomes]
rs73598581	1.00[EUR][1000 genomes]
rs73598585	1.00[EUR][1000 genomes]
rs73600507	1.00[EUR][1000 genomes]
rs7905225	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22844200-22904800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:22856600-22899200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:22858200-22904000	Weak transcription	Colonic Mucosa	Colon
4	chr10:22862400-22902000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:22866600-22893800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:22870200-22893400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:22870400-22895200	Weak transcription	HepG2	liver
8	chr10:22877200-22896400	Weak transcription	Fetal Intestine Large	intestine
9	chr10:22877600-22893400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr10:22879000-22894000	Genic enhancers	Primary T cells fromperipheralblood	blood
11	chr10:22880000-22890600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr10:22880000-22906800	Weak transcription	Colon Smooth Muscle	Colon
13	chr10:22880200-22890400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr10:22880200-22893400	Weak transcription	Ovary	ovary
15	chr10:22880200-22893800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr10:22880200-22895200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:22880200-22896200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:22880200-22897000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr10:22880400-22890400	Weak transcription	Fetal Intestine Small	intestine
20	chr10:22880400-22896600	Weak transcription	Liver	Liver
21	chr10:22880600-22893600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr10:22880800-22890400	Weak transcription	Adipose Nuclei	Adipose
23	chr10:22880800-22893200	Weak transcription	Fetal Lung	lung
24	chr10:22881800-22893400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr10:22883200-22893800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr10:22883200-22894000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr10:22883200-22896200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr10:22883200-22899200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:22885200-22891200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
30	chr10:22885200-22894000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr10:22885200-22896200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr10:22885400-22890400	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr10:22885600-22891000	Genic enhancers	Primary T cells from cord blood	blood
34	chr10:22885800-22891000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr10:22886000-22890600	Weak transcription	Fetal Heart	heart
36	chr10:22886200-22890600	Weak transcription	Fetal Muscle Leg	muscle
37	chr10:22886200-22892000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr10:22886200-22893800	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr10:22886400-22892600	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr10:22886400-22894600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr10:22886600-22896800	Weak transcription	HSMMtube	muscle
42	chr10:22887000-22891000	Enhancers	Primary B cells from peripheral blood	blood
43	chr10:22887000-22894200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr10:22887200-22891200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
45	chr10:22887200-22902400	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr10:22887600-22890600	Enhancers	Fetal Kidney	kidney
47	chr10:22887600-22891000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr10:22887800-22890600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr10:22888200-22891000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr10:22888400-22890800	Genic enhancers	Primary hematopoietic stem cells	blood

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