Variant report

Variant	rs61219681
Chromosome Location	chr10:22935742-22935743
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22925155..22927609-chr10:22932806..22936135,4	K562	blood:
2	chr10:22928174..22930597-chr10:22933685..22936850,3	K562	blood:
3	chr10:22932937..22936248-chr10:23002444..23005154,3	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12261467	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16922378	1.00[EUR][1000 genomes]
rs16922485	1.00[EUR][1000 genomes]
rs16922488	1.00[EUR][1000 genomes]
rs16922522	1.00[EUR][1000 genomes]
rs56977725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57618053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58483189	1.00[EUR][1000 genomes]
rs58606797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59155025	1.00[EUR][1000 genomes]
rs59543181	1.00[EUR][1000 genomes]
rs61443631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61553619	1.00[AMR][1000 genomes]
rs7096631	1.00[EUR][1000 genomes]
rs73598572	1.00[EUR][1000 genomes]
rs73598574	1.00[EUR][1000 genomes]
rs73598580	1.00[EUR][1000 genomes]
rs73598581	1.00[EUR][1000 genomes]
rs73598585	1.00[EUR][1000 genomes]
rs73600507	1.00[EUR][1000 genomes]
rs7905225	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3416716	chr10:22935427-22935935	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22915000-22951800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:22915200-22936200	Weak transcription	Psoas Muscle	Psoas
3	chr10:22920000-22936400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:22921000-22940400	Weak transcription	Ovary	ovary
5	chr10:22923000-22937600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:22923200-22936200	Weak transcription	Esophagus	oesophagus
7	chr10:22926000-22938600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr10:22926800-22936200	Weak transcription	HSMMtube	muscle
9	chr10:22927000-22936200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:22927000-22936200	Weak transcription	Right Ventricle	heart
11	chr10:22927800-22942800	Enhancers	Brain Anterior Caudate	brain
12	chr10:22929200-22938600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:22929600-22948400	Enhancers	Brain Cingulate Gyrus	brain
14	chr10:22929800-22939800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:22930400-22938600	Enhancers	Brain Hippocampus Middle	brain
16	chr10:22931200-22936200	Weak transcription	Left Ventricle	heart
17	chr10:22931200-22938400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:22931200-22938400	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr10:22931600-22941000	Enhancers	Brain Angular Gyrus	brain
20	chr10:22931800-22937000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr10:22932200-22936200	Weak transcription	Fetal Muscle Leg	muscle
22	chr10:22932200-22936400	Weak transcription	NHLF	lung
23	chr10:22932400-22940400	Enhancers	Fetal Thymus	thymus
24	chr10:22932400-22944200	Weak transcription	Brain Germinal Matrix	brain
25	chr10:22932800-22936000	Weak transcription	Liver	Liver
26	chr10:22933200-22936200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:22933200-22936200	Weak transcription	Gastric	stomach
28	chr10:22933200-22936600	Weak transcription	Aorta	Aorta
29	chr10:22933200-22936800	Weak transcription	Stomach Mucosa	stomach
30	chr10:22933400-22936600	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr10:22933400-22937400	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr10:22933600-22936000	Weak transcription	Duodenum Mucosa	Duodenum
33	chr10:22933600-22936200	Weak transcription	Lung	lung
34	chr10:22933600-22936200	Weak transcription	Pancreas	Pancrea
35	chr10:22933600-22936200	Weak transcription	Right Atrium	heart
36	chr10:22933600-22936200	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr10:22933600-22936200	Weak transcription	Spleen	Spleen
38	chr10:22933600-22936400	Enhancers	K562	blood
39	chr10:22933600-22938400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr10:22933600-22944200	Weak transcription	Fetal Stomach	stomach
41	chr10:22934000-22936400	Weak transcription	Small Intestine	intestine
42	chr10:22934600-22936800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr10:22934800-22936400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
44	chr10:22934800-22937800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr10:22934800-22939400	Enhancers	Dnd41	blood
46	chr10:22934800-22942400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr10:22935000-22935800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
48	chr10:22935000-22935800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
49	chr10:22935000-22936200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
50	chr10:22935000-22936200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood

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