Variant report

Variant	rs61553619
Chromosome Location	chr10:22943041-22943042
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22937664..22939892-chr10:22939931..22943485,3	MCF-7	breast:
2	chr10:22940458..22943239-chr10:22943736..22945993,2	K562	blood:
3	chr10:22941879..22944846-chr10:22946582..22948906,3	K562	blood:
4	chr10:22938179..22940547-chr10:22940973..22943233,2	K562	blood:
5	chr10:22942890..22944748-chr10:22969639..22971287,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12261467	1.00[AMR][1000 genomes]
rs56977725	1.00[AMR][1000 genomes]
rs57618053	1.00[AMR][1000 genomes]
rs58606797	1.00[AMR][1000 genomes]
rs61219681	1.00[AMR][1000 genomes]
rs61443631	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22915000-22951800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:22929600-22948400	Enhancers	Brain Cingulate Gyrus	brain
3	chr10:22932400-22944200	Weak transcription	Brain Germinal Matrix	brain
4	chr10:22933600-22944200	Weak transcription	Fetal Stomach	stomach
5	chr10:22935000-22945400	Enhancers	Primary B cells from peripheral blood	blood
6	chr10:22935200-22953000	Enhancers	Brain Substantia Nigra	brain
7	chr10:22936400-22958000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:22936600-22943800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:22936800-22944600	Weak transcription	Gastric	stomach
10	chr10:22936800-22944800	Enhancers	Primary B cells from cord blood	blood
11	chr10:22937000-22944800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr10:22937400-22943200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr10:22937600-22944200	Weak transcription	NHLF	lung
14	chr10:22937800-22944400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr10:22937800-22947800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr10:22937800-22951200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:22937800-22955200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr10:22938000-22944600	Weak transcription	Fetal Heart	heart
19	chr10:22938200-22947800	Weak transcription	NH-A	brain
20	chr10:22938400-22943200	Weak transcription	Fetal Kidney	kidney
21	chr10:22938600-22943600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr10:22938600-22944200	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr10:22938600-22944200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr10:22938600-22944200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:22938600-22944200	Weak transcription	Stomach Mucosa	stomach
26	chr10:22938600-22944400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr10:22938600-22944400	Weak transcription	Osteobl	bone
28	chr10:22938800-22943400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr10:22938800-22943400	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr10:22938800-22943600	Weak transcription	Fetal Lung	lung
31	chr10:22938800-22944200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr10:22938800-22944600	Weak transcription	Colonic Mucosa	Colon
33	chr10:22938800-22946800	Enhancers	Primary hematopoietic stem cells	blood
34	chr10:22938800-22949400	Weak transcription	HMEC	breast
35	chr10:22938800-22949600	Weak transcription	NHEK	skin
36	chr10:22939000-22943400	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr10:22939000-22944200	Weak transcription	NHDF-Ad	bronchial
38	chr10:22939000-22946000	Weak transcription	Psoas Muscle	Psoas
39	chr10:22939000-22947600	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr10:22939200-22944000	Weak transcription	A549	lung
41	chr10:22939200-22944200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr10:22939400-22944400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:22939400-22945200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr10:22939600-22943600	Weak transcription	Placenta	Placenta
45	chr10:22940000-22944200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr10:22940800-22943400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr10:22940800-22943800	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr10:22940800-22944200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr10:22940800-22944200	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr10:22940800-22951800	Weak transcription	Left Ventricle	heart

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