Variant report

Variant	rs58606797
Chromosome Location	chr10:23017653-23017654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12261467	1.00[AMR][1000 genomes]
rs56977725	1.00[AMR][1000 genomes]
rs57618053	1.00[AMR][1000 genomes]
rs61219681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61443631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61553619	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv550210	chr10:23012096-23064702	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3520789	chr10:23014898-23019504	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23004400-23017800	Weak transcription	Spleen	Spleen
2	chr10:23016400-23027600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:23016600-23018000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:23017200-23018200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr10:23017200-23018200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr10:23017600-23017800	Enhancers	Primary B cells from peripheral blood	blood
7	chr10:23017600-23017800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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