Variant report

Variant	rs61443631
Chromosome Location	chr10:22949630-22949631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22947375..22950268-chr10:22969156..22971438,2	K562	blood:
2	chr10:22948750..22951545-chr10:22955363..22957165,2	MCF-7	breast:
3	chr10:22949069..22952747-chr10:22952895..22957056,4	K562	blood:
4	chr10:22918935..22920512-chr10:22949554..22952009,2	K562	blood:
5	chr10:22945163..22950569-chr10:22953734..22956950,6	K562	blood:
6	chr10:22947999..22952068-chr10:22969856..22973732,4	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12261467	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16922378	1.00[EUR][1000 genomes]
rs16922485	1.00[EUR][1000 genomes]
rs16922488	1.00[EUR][1000 genomes]
rs16922522	1.00[EUR][1000 genomes]
rs56977725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57618053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58483189	1.00[EUR][1000 genomes]
rs58606797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59155025	1.00[EUR][1000 genomes]
rs59543181	1.00[EUR][1000 genomes]
rs61219681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61553619	1.00[AMR][1000 genomes]
rs7096631	1.00[EUR][1000 genomes]
rs73598572	1.00[EUR][1000 genomes]
rs73598574	1.00[EUR][1000 genomes]
rs73598580	1.00[EUR][1000 genomes]
rs73598581	1.00[EUR][1000 genomes]
rs73598585	1.00[EUR][1000 genomes]
rs73600507	1.00[EUR][1000 genomes]
rs7905225	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22915000-22951800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:22935200-22953000	Enhancers	Brain Substantia Nigra	brain
3	chr10:22936400-22958000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:22937800-22951200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:22937800-22955200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:22940800-22951800	Weak transcription	Left Ventricle	heart
7	chr10:22942000-22952800	Enhancers	Brain Hippocampus Middle	brain
8	chr10:22942400-22959800	Weak transcription	Right Ventricle	heart
9	chr10:22943400-22952200	Enhancers	Brain Angular Gyrus	brain
10	chr10:22944800-22951600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr10:22944800-22951800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr10:22945000-22950400	Weak transcription	Liver	Liver
13	chr10:22945000-22951800	Weak transcription	Esophagus	oesophagus
14	chr10:22945000-22955200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:22945000-22955200	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr10:22945000-22955200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr10:22945000-22955200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr10:22945000-22955400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr10:22945000-22956800	Weak transcription	Gastric	stomach
20	chr10:22945000-22958000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr10:22945200-22955000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr10:22945200-22955200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr10:22945400-22951600	Weak transcription	Fetal Stomach	stomach
24	chr10:22945400-22951800	Weak transcription	Small Intestine	intestine
25	chr10:22945400-22955400	Weak transcription	Fetal Kidney	kidney
26	chr10:22945400-22958400	Weak transcription	Fetal Muscle Trunk	muscle
27	chr10:22945800-22950200	Enhancers	GM12878-XiMat	blood
28	chr10:22946200-22951600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr10:22946200-22961600	Weak transcription	Aorta	Aorta
30	chr10:22946600-22955000	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr10:22946800-22951800	Weak transcription	HSMMtube	muscle
32	chr10:22947000-22950000	Enhancers	A549	lung
33	chr10:22947000-22951000	Weak transcription	Fetal Lung	lung
34	chr10:22947200-22950200	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr10:22947200-22953200	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr10:22947200-22954200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr10:22947200-22955000	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr10:22947400-22950000	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr10:22947400-22951000	Enhancers	Primary T cells fromperipheralblood	blood
40	chr10:22947400-22951600	Enhancers	Primary T cells from cord blood	blood
41	chr10:22947400-22955400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr10:22947600-22949800	Enhancers	Primary B cells from peripheral blood	blood
43	chr10:22947600-22950000	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr10:22947600-22950200	Enhancers	K562	blood
45	chr10:22947800-22949800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr10:22947800-22950600	Enhancers	Fetal Thymus	thymus
47	chr10:22947800-22950800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr10:22947800-22955000	Weak transcription	Primary B cells from cord blood	blood
49	chr10:22948000-22953400	Weak transcription	Primary hematopoietic stem cells	blood
50	chr10:22948000-22961400	Weak transcription	H9 Cell Line	embryonic stem cell

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