Variant report

Variant	rs16922522
Chromosome Location	chr10:22916789-22916790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22916238..22918740-chr10:23000719..23005103,4	K562	blood:
2	chr10:22915388..22917585-chr10:22971336..22974325,2	MCF-7	breast:
3	chr10:22916181..22917774-chr10:22919461..22921266,2	K562	blood:
4	chr10:22884698..22886751-chr10:22916434..22918083,2	K562	blood:
5	chr10:22915419..22921147-chr10:22965660..22970538,6	K562	blood:
6	chr10:22913134..22918197-chr10:23342744..23346247,5	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12261467	1.00[EUR][1000 genomes]
rs16922378	1.00[EUR][1000 genomes]
rs16922485	1.00[EUR][1000 genomes]
rs16922488	1.00[EUR][1000 genomes]
rs56977725	1.00[EUR][1000 genomes]
rs57618053	1.00[EUR][1000 genomes]
rs58483189	1.00[EUR][1000 genomes]
rs59155025	1.00[EUR][1000 genomes]
rs59543181	1.00[EUR][1000 genomes]
rs61219681	1.00[EUR][1000 genomes]
rs61443631	1.00[EUR][1000 genomes]
rs7096631	1.00[EUR][1000 genomes]
rs73598572	1.00[EUR][1000 genomes]
rs73598574	1.00[EUR][1000 genomes]
rs73598580	1.00[EUR][1000 genomes]
rs73598581	1.00[EUR][1000 genomes]
rs73598585	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73600507	1.00[EUR][1000 genomes]
rs7905225	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22901600-22918200	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr10:22901800-22918800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr10:22902400-22921600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:22903800-22922000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:22905000-22918600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr10:22905200-22919400	Enhancers	NHDF-Ad	bronchial
7	chr10:22906400-22918200	Enhancers	NHLF	lung
8	chr10:22907600-22922400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr10:22907800-22919000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr10:22908200-22918000	Weak transcription	Primary B cells from cord blood	blood
11	chr10:22908800-22918200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr10:22909800-22917000	Enhancers	HUVEC	blood vessel
13	chr10:22909800-22917600	Weak transcription	Thymus	Thymus
14	chr10:22909800-22930400	Weak transcription	Fetal Stomach	stomach
15	chr10:22910000-22918600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr10:22910200-22919000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:22910600-22917600	Weak transcription	Aorta	Aorta
18	chr10:22911200-22917800	Enhancers	HepG2	liver
19	chr10:22911400-22921400	Enhancers	Brain Hippocampus Middle	brain
20	chr10:22911600-22920200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:22912200-22917000	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr10:22912400-22917000	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr10:22912400-22917000	Enhancers	NH-A	brain
24	chr10:22912400-22917600	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr10:22912400-22918200	Enhancers	HSMM	muscle
26	chr10:22912600-22919000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr10:22912600-22921000	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr10:22912800-22917000	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr10:22912800-22919000	Weak transcription	Lung	lung
30	chr10:22912800-22921400	Weak transcription	Esophagus	oesophagus
31	chr10:22912800-22925600	Weak transcription	Pancreas	Pancrea
32	chr10:22912800-22929200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:22913000-22918800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr10:22913200-22917600	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr10:22913200-22918200	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr10:22913400-22916800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr10:22913400-22919000	Enhancers	Primary T cells from cord blood	blood
38	chr10:22913600-22916800	Enhancers	A549	lung
39	chr10:22913600-22917600	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr10:22913600-22918200	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr10:22913600-22919000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr10:22913800-22918200	Weak transcription	Dnd41	blood
43	chr10:22913800-22918600	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr10:22913800-22918800	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr10:22913800-22919000	Weak transcription	Adipose Nuclei	Adipose
46	chr10:22913800-22919400	Weak transcription	Stomach Smooth Muscle	stomach
47	chr10:22914200-22920200	Enhancers	Brain Anterior Caudate	brain
48	chr10:22914400-22917000	Enhancers	Colon Smooth Muscle	Colon
49	chr10:22914400-22918200	Enhancers	H1 Cell Line	embryonic stem cell
50	chr10:22914400-22920000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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