Variant report

Variant	rs73598585
Chromosome Location	chr10:22925700-22925701
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22925448..22927926-chr10:22944270..22946510,2	MCF-7	breast:
2	chr10:22918472..22921530-chr10:22924076..22926410,3	K562	blood:
3	chr10:22916861..22924296-chr10:22924379..22934526,17	K562	blood:
4	chr10:22925155..22927609-chr10:22932806..22936135,4	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12261467	1.00[EUR][1000 genomes]
rs16922378	1.00[EUR][1000 genomes]
rs16922485	1.00[EUR][1000 genomes]
rs16922488	1.00[EUR][1000 genomes]
rs16922522	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56977725	1.00[EUR][1000 genomes]
rs57618053	1.00[EUR][1000 genomes]
rs58483189	1.00[EUR][1000 genomes]
rs59155025	1.00[EUR][1000 genomes]
rs59543181	1.00[EUR][1000 genomes]
rs61219681	1.00[EUR][1000 genomes]
rs61443631	1.00[EUR][1000 genomes]
rs7096631	1.00[EUR][1000 genomes]
rs73598572	1.00[EUR][1000 genomes]
rs73598574	1.00[EUR][1000 genomes]
rs73598580	1.00[EUR][1000 genomes]
rs73598581	1.00[EUR][1000 genomes]
rs73600507	1.00[EUR][1000 genomes]
rs7905225	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22909800-22930400	Weak transcription	Fetal Stomach	stomach
2	chr10:22912800-22929200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:22915000-22926200	Weak transcription	Fetal Heart	heart
4	chr10:22915000-22951800	Weak transcription	Fetal Intestine Small	intestine
5	chr10:22915200-22926600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:22915200-22935600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:22915200-22936200	Weak transcription	Psoas Muscle	Psoas
8	chr10:22915400-22935400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:22917400-22928200	Enhancers	Brain Substantia Nigra	brain
10	chr10:22919200-22931600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:22919800-22928200	Enhancers	Primary B cells from peripheral blood	blood
12	chr10:22919800-22935000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr10:22920000-22927800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:22920000-22929800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr10:22920000-22929800	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr10:22920000-22931800	Weak transcription	Fetal Lung	lung
17	chr10:22920000-22931800	Weak transcription	NHLF	lung
18	chr10:22920000-22935000	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr10:22920000-22936400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr10:22920200-22927600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:22920200-22935200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr10:22920400-22930600	Weak transcription	Aorta	Aorta
23	chr10:22920600-22929200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr10:22920600-22929200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr10:22920800-22933600	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr10:22921000-22925800	Weak transcription	Fetal Thymus	thymus
27	chr10:22921000-22926400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr10:22921000-22929800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr10:22921000-22933000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr10:22921000-22940400	Weak transcription	Ovary	ovary
31	chr10:22921200-22928200	Enhancers	Brain Angular Gyrus	brain
32	chr10:22921200-22928600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr10:22921200-22935000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr10:22921200-22935400	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr10:22921600-22925800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:22921600-22926400	Weak transcription	HepG2	liver
37	chr10:22921600-22930000	Enhancers	Brain Hippocampus Middle	brain
38	chr10:22922000-22926000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
39	chr10:22922200-22926400	Weak transcription	Left Ventricle	heart
40	chr10:22922400-22925800	Strong transcription	Primary hematopoietic stem cells	blood
41	chr10:22922800-22926400	Weak transcription	Right Ventricle	heart
42	chr10:22922800-22933000	Weak transcription	Lung	lung
43	chr10:22923000-22926400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr10:22923000-22927400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
45	chr10:22923000-22937600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr10:22923200-22926600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr10:22923200-22932400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr10:22923200-22936200	Weak transcription	Esophagus	oesophagus
49	chr10:22923400-22929400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr10:22923600-22930800	Enhancers	Primary T helper naive cells from peripheral blood	blood

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