Variant report

Variant	rs12261467
Chromosome Location	chr10:22933605-22933606
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22921732..22923797-chr10:22932464..22934679,2	MCF-7	breast:
2	chr10:22925155..22927609-chr10:22932806..22936135,4	K562	blood:
3	chr10:22902985..22904856-chr10:22930809..22933624,2	MCF-7	breast:
4	chr10:22916861..22924296-chr10:22924379..22934526,17	K562	blood:
5	chr10:22932646..22934969-chr10:22944582..22946637,2	K562	blood:
6	chr10:22932937..22936248-chr10:23002444..23005154,3	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16922378	1.00[EUR][1000 genomes]
rs16922485	1.00[EUR][1000 genomes]
rs16922488	1.00[EUR][1000 genomes]
rs16922522	1.00[EUR][1000 genomes]
rs56977725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57618053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58483189	1.00[EUR][1000 genomes]
rs58606797	1.00[AMR][1000 genomes]
rs59155025	1.00[EUR][1000 genomes]
rs59543181	1.00[EUR][1000 genomes]
rs61219681	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61443631	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61553619	1.00[AMR][1000 genomes]
rs7096631	1.00[EUR][1000 genomes]
rs73598572	1.00[EUR][1000 genomes]
rs73598574	1.00[EUR][1000 genomes]
rs73598580	1.00[EUR][1000 genomes]
rs73598581	1.00[EUR][1000 genomes]
rs73598585	1.00[EUR][1000 genomes]
rs73600507	1.00[EUR][1000 genomes]
rs7905225	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22915000-22951800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:22915200-22935600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:22915200-22936200	Weak transcription	Psoas Muscle	Psoas
4	chr10:22915400-22935400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:22919800-22935000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr10:22920000-22935000	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr10:22920000-22936400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:22920200-22935200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr10:22921000-22940400	Weak transcription	Ovary	ovary
10	chr10:22921200-22935000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr10:22921200-22935400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr10:22923000-22937600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:22923200-22936200	Weak transcription	Esophagus	oesophagus
14	chr10:22926000-22938600	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr10:22926200-22935200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:22926800-22935000	Weak transcription	Thymus	Thymus
17	chr10:22926800-22936200	Weak transcription	HSMMtube	muscle
18	chr10:22927000-22936200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:22927000-22936200	Weak transcription	Right Ventricle	heart
20	chr10:22927800-22942800	Enhancers	Brain Anterior Caudate	brain
21	chr10:22929200-22938600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr10:22929400-22934200	Enhancers	Brain Substantia Nigra	brain
23	chr10:22929600-22935600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr10:22929600-22948400	Enhancers	Brain Cingulate Gyrus	brain
25	chr10:22929800-22939800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:22930400-22935400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:22930400-22938600	Enhancers	Brain Hippocampus Middle	brain
28	chr10:22930600-22934600	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr10:22930800-22935000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr10:22930800-22935000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr10:22931000-22934800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr10:22931000-22935000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr10:22931000-22935200	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr10:22931200-22935000	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr10:22931200-22935000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr10:22931200-22936200	Weak transcription	Left Ventricle	heart
37	chr10:22931200-22938400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr10:22931200-22938400	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr10:22931600-22941000	Enhancers	Brain Angular Gyrus	brain
40	chr10:22931800-22935000	Enhancers	Primary T cells fromperipheralblood	blood
41	chr10:22931800-22937000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr10:22932000-22935000	Enhancers	Primary T cells from cord blood	blood
43	chr10:22932000-22935000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr10:22932200-22933800	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr10:22932200-22935600	Weak transcription	Fetal Lung	lung
46	chr10:22932200-22936200	Weak transcription	Fetal Muscle Leg	muscle
47	chr10:22932200-22936400	Weak transcription	NHLF	lung
48	chr10:22932400-22935000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr10:22932400-22935400	Enhancers	Primary hematopoietic stem cells	blood
50	chr10:22932400-22940400	Enhancers	Fetal Thymus	thymus

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