Variant report

Variant	rs16922485
Chromosome Location	chr10:22885857-22885858
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22881423..22883743-chr10:22885437..22887550,3	MCF-7	breast:
2	chr10:22885033..22888742-chr10:22902706..22906221,3	K562	blood:
3	chr10:22884698..22886751-chr10:22916434..22918083,2	K562	blood:
4	chr10:22872919..22875854-chr10:22885785..22887970,2	K562	blood:
5	chr10:22882918..22885289-chr10:22885460..22887558,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12261467	1.00[EUR][1000 genomes]
rs16922378	1.00[EUR][1000 genomes]
rs16922488	1.00[EUR][1000 genomes]
rs16922522	1.00[EUR][1000 genomes]
rs56977725	1.00[EUR][1000 genomes]
rs57618053	1.00[EUR][1000 genomes]
rs58483189	1.00[EUR][1000 genomes]
rs59155025	1.00[EUR][1000 genomes]
rs59543181	1.00[EUR][1000 genomes]
rs61219681	1.00[EUR][1000 genomes]
rs61443631	1.00[EUR][1000 genomes]
rs7096631	1.00[EUR][1000 genomes]
rs73598572	1.00[EUR][1000 genomes]
rs73598574	1.00[EUR][1000 genomes]
rs73598580	1.00[EUR][1000 genomes]
rs73598581	1.00[EUR][1000 genomes]
rs73598585	1.00[EUR][1000 genomes]
rs73600507	1.00[EUR][1000 genomes]
rs7905225	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22825600-22888000	Weak transcription	HMEC	breast
2	chr10:22829000-22887400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:22844200-22904800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:22854200-22887400	Weak transcription	NHDF-Ad	bronchial
5	chr10:22854200-22887400	Weak transcription	NHEK	skin
6	chr10:22856600-22899200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:22856800-22888200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:22857000-22888200	Weak transcription	Small Intestine	intestine
9	chr10:22858200-22904000	Weak transcription	Colonic Mucosa	Colon
10	chr10:22862400-22886000	Weak transcription	HSMMtube	muscle
11	chr10:22862400-22887400	Weak transcription	A549	lung
12	chr10:22862400-22902000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr10:22863800-22886400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr10:22866600-22887600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr10:22866600-22893800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:22870200-22893400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr10:22870400-22895200	Weak transcription	HepG2	liver
18	chr10:22872000-22887600	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr10:22874000-22888200	Weak transcription	Placenta	Placenta
20	chr10:22875800-22888000	Weak transcription	Stomach Mucosa	stomach
21	chr10:22877200-22896400	Weak transcription	Fetal Intestine Large	intestine
22	chr10:22877400-22890200	Weak transcription	Right Ventricle	heart
23	chr10:22877600-22893400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr10:22878600-22886000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr10:22879000-22894000	Genic enhancers	Primary T cells fromperipheralblood	blood
26	chr10:22879400-22888400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:22879600-22887400	Weak transcription	HUVEC	blood vessel
28	chr10:22880000-22886000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:22880000-22887400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr10:22880000-22890600	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr10:22880000-22906800	Weak transcription	Colon Smooth Muscle	Colon
32	chr10:22880200-22886000	Weak transcription	Pancreas	Pancrea
33	chr10:22880200-22887400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:22880200-22889400	Weak transcription	Aorta	Aorta
35	chr10:22880200-22890000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr10:22880200-22890400	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr10:22880200-22893400	Weak transcription	Ovary	ovary
38	chr10:22880200-22893800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr10:22880200-22895200	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr10:22880200-22896200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr10:22880200-22897000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr10:22880400-22887400	Weak transcription	HSMM	muscle
43	chr10:22880400-22890400	Weak transcription	Fetal Intestine Small	intestine
44	chr10:22880400-22896600	Weak transcription	Liver	Liver
45	chr10:22880600-22887400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr10:22880600-22887400	Weak transcription	Osteobl	bone
47	chr10:22880600-22893600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr10:22880800-22886000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:22880800-22889400	Weak transcription	Esophagus	oesophagus
50	chr10:22880800-22890400	Weak transcription	Adipose Nuclei	Adipose

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