Variant report

Variant	rs59403140
Chromosome Location	chr10:22917070-22917071
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22916238..22918740-chr10:23000719..23005103,4	K562	blood:
2	chr10:22915388..22917585-chr10:22971336..22974325,2	MCF-7	breast:
3	chr10:22916181..22917774-chr10:22919461..22921266,2	K562	blood:
4	chr10:22884698..22886751-chr10:22916434..22918083,2	K562	blood:
5	chr10:22916861..22924296-chr10:22924379..22934526,17	K562	blood:
6	chr10:22915419..22921147-chr10:22965660..22970538,6	K562	blood:
7	chr10:22913134..22918197-chr10:23342744..23346247,5	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10508650	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10508651	0.91[ASN][1000 genomes]
rs12098721	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1624192	1.00[ASN][1000 genomes]
rs1626919	0.83[ASN][1000 genomes]
rs1631873	1.00[ASN][1000 genomes]
rs16922529	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922530	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922539	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922560	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922564	0.88[EUR][1000 genomes]
rs16922566	0.88[EUR][1000 genomes]
rs1750759	1.00[ASN][1000 genomes]
rs17525760	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17526135	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1778317	1.00[ASN][1000 genomes]
rs1778327	1.00[ASN][1000 genomes]
rs61531925	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075499	0.82[EUR][1000 genomes]
rs7902016	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909660	0.88[EUR][1000 genomes]
rs7924019	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22901600-22918200	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr10:22901800-22918800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr10:22902400-22921600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:22903800-22922000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:22905000-22918600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr10:22905200-22919400	Enhancers	NHDF-Ad	bronchial
7	chr10:22906400-22918200	Enhancers	NHLF	lung
8	chr10:22907600-22922400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr10:22907800-22919000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr10:22908200-22918000	Weak transcription	Primary B cells from cord blood	blood
11	chr10:22908800-22918200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr10:22909800-22917600	Weak transcription	Thymus	Thymus
13	chr10:22909800-22930400	Weak transcription	Fetal Stomach	stomach
14	chr10:22910000-22918600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr10:22910200-22919000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:22910600-22917600	Weak transcription	Aorta	Aorta
17	chr10:22911200-22917800	Enhancers	HepG2	liver
18	chr10:22911400-22921400	Enhancers	Brain Hippocampus Middle	brain
19	chr10:22911600-22920200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:22912400-22917600	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr10:22912400-22918200	Enhancers	HSMM	muscle
22	chr10:22912600-22919000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:22912600-22921000	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr10:22912800-22919000	Weak transcription	Lung	lung
25	chr10:22912800-22921400	Weak transcription	Esophagus	oesophagus
26	chr10:22912800-22925600	Weak transcription	Pancreas	Pancrea
27	chr10:22912800-22929200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:22913000-22918800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr10:22913200-22917600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr10:22913200-22918200	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr10:22913400-22919000	Enhancers	Primary T cells from cord blood	blood
32	chr10:22913600-22917600	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr10:22913600-22918200	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr10:22913600-22919000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr10:22913800-22918200	Weak transcription	Dnd41	blood
36	chr10:22913800-22918600	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr10:22913800-22918800	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr10:22913800-22919000	Weak transcription	Adipose Nuclei	Adipose
39	chr10:22913800-22919400	Weak transcription	Stomach Smooth Muscle	stomach
40	chr10:22914200-22920200	Enhancers	Brain Anterior Caudate	brain
41	chr10:22914400-22918200	Enhancers	H1 Cell Line	embryonic stem cell
42	chr10:22914400-22920000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr10:22914600-22919200	Enhancers	Primary B cells from peripheral blood	blood
44	chr10:22914800-22918800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr10:22914800-22918800	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr10:22915000-22917400	Weak transcription	Fetal Thymus	thymus
47	chr10:22915000-22917800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr10:22915000-22918800	Enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr10:22915000-22919000	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr10:22915000-22919800	Weak transcription	Ovary	ovary

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