Variant report

Variant	rs1624192
Chromosome Location	chr10:22923650-22923651
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22921732..22923797-chr10:22932464..22934679,2	MCF-7	breast:
2	chr10:22922614..22924888-chr10:22963775..22965652,2	K562	blood:
3	chr10:22922677..22924521-chr10:22929948..22932446,2	MCF-7	breast:
4	chr10:22916861..22924296-chr10:22924379..22934526,17	K562	blood:
5	chr10:22921231..22923695-chr10:22925990..22927982,2	MCF-7	breast:
6	chr10:22919663..22921834-chr10:22923042..22924777,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10159697	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10159847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10218845	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10508650	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10508651	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10828320	1.00[JPT][hapmap]
rs11013103	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11013105	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11013106	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11592199	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12098721	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12255136	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12257665	1.00[CHB][hapmap]
rs1359642	0.82[EUR][1000 genomes]
rs1626919	0.91[CEU][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1631873	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922529	1.00[ASN][1000 genomes]
rs16922530	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16922539	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16922560	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16922564	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16922578	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16922580	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16922586	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1750759	1.00[ASN][1000 genomes]
rs1750770	0.84[CEU][hapmap];0.91[EUR][1000 genomes]
rs17525760	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17526135	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1778302	1.00[JPT][hapmap]
rs1778317	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1778327	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59403140	1.00[ASN][1000 genomes]
rs61531925	1.00[ASN][1000 genomes]
rs6482227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6482228	1.00[JPT][hapmap]
rs7071198	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7075433	1.00[JPT][hapmap]
rs7075499	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7090286	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7100490	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7900517	1.00[JPT][hapmap]
rs7902016	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7919243	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7924019	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs997650	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22909800-22930400	Weak transcription	Fetal Stomach	stomach
2	chr10:22912800-22925600	Weak transcription	Pancreas	Pancrea
3	chr10:22912800-22929200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:22915000-22926200	Weak transcription	Fetal Heart	heart
5	chr10:22915000-22951800	Weak transcription	Fetal Intestine Small	intestine
6	chr10:22915200-22924000	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:22915200-22926600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr10:22915200-22935600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:22915200-22936200	Weak transcription	Psoas Muscle	Psoas
10	chr10:22915400-22935400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:22916000-22925000	Enhancers	Brain Cingulate Gyrus	brain
12	chr10:22917400-22928200	Enhancers	Brain Substantia Nigra	brain
13	chr10:22919200-22931600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:22919600-22924600	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr10:22919800-22928200	Enhancers	Primary B cells from peripheral blood	blood
16	chr10:22919800-22935000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr10:22920000-22924400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:22920000-22925400	Enhancers	Primary T cells fromperipheralblood	blood
19	chr10:22920000-22927800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr10:22920000-22929800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr10:22920000-22929800	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr10:22920000-22931800	Weak transcription	Fetal Lung	lung
23	chr10:22920000-22931800	Weak transcription	NHLF	lung
24	chr10:22920000-22935000	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr10:22920000-22936400	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr10:22920200-22925600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:22920200-22927600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:22920200-22935200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr10:22920400-22923800	Weak transcription	Thymus	Thymus
30	chr10:22920400-22930600	Weak transcription	Aorta	Aorta
31	chr10:22920600-22924400	Weak transcription	Small Intestine	intestine
32	chr10:22920600-22929200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:22920600-22929200	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr10:22920800-22924800	Enhancers	Brain Anterior Caudate	brain
35	chr10:22920800-22925200	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr10:22920800-22933600	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr10:22921000-22924000	Weak transcription	Duodenum Mucosa	Duodenum
38	chr10:22921000-22925200	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr10:22921000-22925800	Weak transcription	Fetal Thymus	thymus
40	chr10:22921000-22926400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr10:22921000-22929800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr10:22921000-22933000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr10:22921000-22940400	Weak transcription	Ovary	ovary
44	chr10:22921200-22924400	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr10:22921200-22928200	Enhancers	Brain Angular Gyrus	brain
46	chr10:22921200-22928600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr10:22921200-22935000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr10:22921200-22935400	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr10:22921600-22924000	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr10:22921600-22925800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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