Variant report

Variant	rs1359642
Chromosome Location	chr10:22915624-22915625
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22915388..22917585-chr10:22971336..22974325,2	MCF-7	breast:
2	chr10:22897477..22901298-chr10:22912360..22915668,3	K562	blood:
3	chr10:22906504..22909168-chr10:22914292..22915841,2	MCF-7	breast:
4	chr10:22915419..22921147-chr10:22965660..22970538,6	K562	blood:
5	chr10:22912929..22915969-chr10:22917754..22921150,3	MCF-7	breast:
6	chr10:22913134..22918197-chr10:23342744..23346247,5	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12254366	0.83[ASN][1000 genomes]
rs1326338	0.83[ASN][1000 genomes]
rs1326341	0.85[ASN][1000 genomes]
rs1624192	0.82[EUR][1000 genomes]
rs1626919	0.91[EUR][1000 genomes]
rs1631873	0.91[EUR][1000 genomes]
rs1750752	0.83[ASN][1000 genomes]
rs1750760	0.85[ASN][1000 genomes]
rs1750770	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1778317	0.88[EUR][1000 genomes]
rs1778327	0.91[EUR][1000 genomes]
rs1778351	0.83[ASN][1000 genomes]
rs1778356	0.83[ASN][1000 genomes]
rs2559523	0.83[ASN][1000 genomes]
rs2559524	0.83[ASN][1000 genomes]
rs2765995	0.83[ASN][1000 genomes]
rs2798982	0.83[ASN][1000 genomes]
rs2913109	0.83[ASN][1000 genomes]
rs7098460	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22901600-22918200	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr10:22901800-22918800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr10:22902400-22921600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:22903800-22922000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:22905000-22918600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr10:22905200-22919400	Enhancers	NHDF-Ad	bronchial
7	chr10:22906400-22918200	Enhancers	NHLF	lung
8	chr10:22907600-22922400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr10:22907800-22919000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr10:22908200-22918000	Weak transcription	Primary B cells from cord blood	blood
11	chr10:22908800-22916200	Weak transcription	Liver	Liver
12	chr10:22908800-22918200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr10:22909800-22917000	Enhancers	HUVEC	blood vessel
14	chr10:22909800-22917600	Weak transcription	Thymus	Thymus
15	chr10:22909800-22930400	Weak transcription	Fetal Stomach	stomach
16	chr10:22910000-22916200	Weak transcription	Stomach Mucosa	stomach
17	chr10:22910000-22916400	Enhancers	Brain Angular Gyrus	brain
18	chr10:22910000-22918600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr10:22910200-22915800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr10:22910200-22919000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:22910600-22916400	Enhancers	Brain Substantia Nigra	brain
22	chr10:22910600-22917600	Weak transcription	Aorta	Aorta
23	chr10:22911200-22917800	Enhancers	HepG2	liver
24	chr10:22911400-22921400	Enhancers	Brain Hippocampus Middle	brain
25	chr10:22911600-22920200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr10:22912000-22916400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:22912200-22916200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:22912200-22916400	Enhancers	Muscle Satellite Cultured Cells	--
29	chr10:22912200-22917000	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr10:22912400-22916200	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr10:22912400-22916400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:22912400-22916400	Enhancers	Osteobl	bone
33	chr10:22912400-22917000	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr10:22912400-22917000	Enhancers	NH-A	brain
35	chr10:22912400-22917600	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr10:22912400-22918200	Enhancers	HSMM	muscle
37	chr10:22912600-22916200	Weak transcription	Small Intestine	intestine
38	chr10:22912600-22916400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr10:22912600-22919000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr10:22912600-22921000	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr10:22912800-22917000	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr10:22912800-22919000	Weak transcription	Lung	lung
43	chr10:22912800-22921400	Weak transcription	Esophagus	oesophagus
44	chr10:22912800-22925600	Weak transcription	Pancreas	Pancrea
45	chr10:22912800-22929200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:22913000-22918800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr10:22913200-22917600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr10:22913200-22918200	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr10:22913400-22916800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
50	chr10:22913400-22919000	Enhancers	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links