Variant report

Variant	rs2913109
Chromosome Location	chr10:22890965-22890966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22887097..22891017-chr10:22894744..22899143,5	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10159847	0.83[GIH][hapmap]
rs1062190	1.00[CHB][hapmap];0.89[CHD][hapmap];0.84[GIH][hapmap];0.88[JPT][hapmap];0.92[MEX][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10764338	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.84[GIH][hapmap];0.88[JPT][hapmap];0.92[MEX][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11013104	0.84[CHD][hapmap]
rs11013110	0.88[JPT][hapmap]
rs1171505	0.88[JPT][hapmap]
rs12254366	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12261508	0.80[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs1326338	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326341	0.90[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1359642	0.83[ASN][1000 genomes]
rs1409397	0.89[JPT][hapmap]
rs1631873	0.87[GIH][hapmap]
rs16922479	0.80[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs1750750	0.89[JPT][hapmap]
rs1750752	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1750754	0.89[JPT][hapmap]
rs1750757	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs1750760	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1750770	0.86[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];0.88[JPT][hapmap]
rs1778302	0.95[GIH][hapmap];0.96[TSI][hapmap]
rs1778317	0.91[GIH][hapmap]
rs1778331	0.89[JPT][hapmap]
rs1778351	0.89[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1778353	0.81[CHD][hapmap];0.89[JPT][hapmap]
rs1778355	0.89[JPT][hapmap]
rs1778356	0.90[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2559520	0.95[GIH][hapmap];0.96[TSI][hapmap];0.83[EUR][1000 genomes]
rs2559522	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2559523	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.96[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2559524	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2559526	0.89[JPT][hapmap]
rs2559527	0.89[JPT][hapmap]
rs2559528	0.86[JPT][hapmap]
rs2559529	0.80[CEU][hapmap];0.91[GIH][hapmap];0.96[TSI][hapmap];0.88[EUR][1000 genomes]
rs2765993	0.80[CEU][hapmap];0.95[GIH][hapmap];0.96[TSI][hapmap];0.90[EUR][1000 genomes]
rs2765994	0.89[JPT][hapmap]
rs2765995	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2765996	0.91[GIH][hapmap];0.96[TSI][hapmap];0.85[EUR][1000 genomes]
rs2798982	0.90[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2913108	0.80[CEU][hapmap]
rs2913110	0.89[JPT][hapmap]
rs7094187	0.88[JPT][hapmap]
rs7095020	0.88[JPT][hapmap]
rs7098460	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7099314	0.89[JPT][hapmap]
rs754822	0.89[JPT][hapmap]
rs7907744	0.83[GIH][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes]
rs7912144	0.80[CEU][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7916957	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.88[JPT][hapmap];0.83[MEX][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22844200-22904800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:22856600-22899200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:22858200-22904000	Weak transcription	Colonic Mucosa	Colon
4	chr10:22862400-22902000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:22866600-22893800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:22870200-22893400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:22870400-22895200	Weak transcription	HepG2	liver
8	chr10:22877200-22896400	Weak transcription	Fetal Intestine Large	intestine
9	chr10:22877600-22893400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr10:22879000-22894000	Genic enhancers	Primary T cells fromperipheralblood	blood
11	chr10:22880000-22906800	Weak transcription	Colon Smooth Muscle	Colon
12	chr10:22880200-22893400	Weak transcription	Ovary	ovary
13	chr10:22880200-22893800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr10:22880200-22895200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr10:22880200-22896200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:22880200-22897000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr10:22880400-22896600	Weak transcription	Liver	Liver
18	chr10:22880600-22893600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr10:22880800-22893200	Weak transcription	Fetal Lung	lung
20	chr10:22881800-22893400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:22883200-22893800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr10:22883200-22894000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr10:22883200-22896200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr10:22883200-22899200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:22885200-22891200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
26	chr10:22885200-22894000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr10:22885200-22896200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr10:22885600-22891000	Genic enhancers	Primary T cells from cord blood	blood
29	chr10:22885800-22891000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr10:22886200-22892000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr10:22886200-22893800	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr10:22886400-22892600	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr10:22886400-22894600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr10:22886600-22896800	Weak transcription	HSMMtube	muscle
35	chr10:22887000-22891000	Enhancers	Primary B cells from peripheral blood	blood
36	chr10:22887000-22894200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr10:22887200-22891200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
38	chr10:22887200-22902400	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr10:22887600-22891000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr10:22888200-22891000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr10:22888600-22891000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
42	chr10:22888600-22892400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:22888600-22893600	Weak transcription	Small Intestine	intestine
44	chr10:22888600-22893800	Weak transcription	HMEC	breast
45	chr10:22888600-22895000	Weak transcription	Placenta	Placenta
46	chr10:22888800-22891200	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr10:22888800-22893000	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr10:22888800-22893200	Weak transcription	Duodenum Mucosa	Duodenum
49	chr10:22888800-22893600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:22888800-22893800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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