Variant report

Variant	rs2559529
Chromosome Location	chr10:22899350-22899351
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22898960..22901520-chr10:22921454..22923581,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10159847	0.85[CHD][hapmap];0.91[GIH][hapmap]
rs10218845	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10828320	1.00[CHB][hapmap];0.80[GIH][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs1326338	0.87[EUR][1000 genomes]
rs1631873	0.95[GIH][hapmap]
rs1750752	0.81[EUR][1000 genomes]
rs1750759	0.87[EUR][1000 genomes]
rs1750770	0.87[GIH][hapmap]
rs1778302	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1778317	0.91[GIH][hapmap]
rs1778344	0.92[YRI][hapmap]
rs1778351	0.82[EUR][1000 genomes]
rs1778352	0.86[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2559520	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2559523	0.91[GIH][hapmap];0.91[TSI][hapmap]
rs2559524	0.91[GIH][hapmap];0.91[TSI][hapmap]
rs2765993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2765995	0.80[EUR][1000 genomes]
rs2765996	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2913108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2913109	0.80[CEU][hapmap];0.91[GIH][hapmap];0.96[TSI][hapmap];0.88[EUR][1000 genomes]
rs4498874	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4748819	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7072792	0.90[LWK][hapmap]
rs7075433	1.00[CHB][hapmap];0.80[GIH][hapmap];0.89[MEX][hapmap];0.84[AMR][1000 genomes]
rs7093543	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7099102	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72816826	0.84[ASN][1000 genomes]
rs7900517	0.88[CEU][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7907744	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7916957	0.80[GIH][hapmap]
rs7918943	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22844200-22904800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:22858200-22904000	Weak transcription	Colonic Mucosa	Colon
3	chr10:22862400-22902000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:22880000-22906800	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:22887200-22902400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:22888800-22905000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:22889400-22904400	Weak transcription	Hela-S3	cervix
8	chr10:22891000-22901400	Weak transcription	Gastric	stomach
9	chr10:22891000-22904800	Weak transcription	Right Ventricle	heart
10	chr10:22891200-22904800	Weak transcription	NHLF	lung
11	chr10:22893600-22902000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr10:22894000-22902600	Weak transcription	Right Atrium	heart
13	chr10:22894000-22906600	Weak transcription	Ovary	ovary
14	chr10:22894200-22904600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr10:22894600-22903000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:22894600-22904400	Weak transcription	NHDF-Ad	bronchial
17	chr10:22894600-22904600	Weak transcription	NHEK	skin
18	chr10:22894600-22905000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr10:22894800-22899400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr10:22894800-22904600	Weak transcription	Adipose Nuclei	Adipose
21	chr10:22894800-22913000	Weak transcription	Fetal Kidney	kidney
22	chr10:22895400-22899400	Genic enhancers	Brain Hippocampus Middle	brain
23	chr10:22895400-22904600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:22895600-22899400	Weak transcription	HepG2	liver
25	chr10:22895600-22901000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr10:22895600-22902000	Weak transcription	Pancreas	Pancrea
27	chr10:22895600-22902200	Weak transcription	Placenta	Placenta
28	chr10:22895600-22906000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:22895800-22900200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr10:22895800-22904600	Weak transcription	HUVEC	blood vessel
31	chr10:22895800-22904800	Weak transcription	NH-A	brain
32	chr10:22896000-22899800	Strong transcription	K562	blood
33	chr10:22896000-22902600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr10:22896200-22899600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
35	chr10:22896200-22901600	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr10:22896400-22904000	Weak transcription	Duodenum Mucosa	Duodenum
37	chr10:22896400-22904600	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr10:22896400-22904600	Weak transcription	A549	lung
39	chr10:22896400-22904800	Weak transcription	Osteobl	bone
40	chr10:22896600-22899400	Genic enhancers	GM12878-XiMat	blood
41	chr10:22896600-22899600	Strong transcription	Dnd41	blood
42	chr10:22896600-22902200	Weak transcription	Esophagus	oesophagus
43	chr10:22896600-22904600	Weak transcription	HSMM	muscle
44	chr10:22896800-22899400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr10:22897200-22899400	Weak transcription	Brain Angular Gyrus	brain
46	chr10:22897200-22900400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr10:22897200-22901000	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr10:22897200-22907000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr10:22897400-22901200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr10:22897400-22901200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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