Variant report

Variant	rs7072792
Chromosome Location	chr10:22922591-22922592
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22921732..22923797-chr10:22932464..22934679,2	MCF-7	breast:
2	chr10:22920959..22922895-chr10:22971419..22973698,3	MCF-7	breast:
3	chr10:22922128..22922827-chr3:32489011..32489511,2	MCF-7	breast:
4	chr10:22918230..22923281-chr10:22970702..22974726,7	K562	blood:
5	chr10:22916861..22924296-chr10:22924379..22934526,17	K562	blood:
6	chr10:22921738..22922640-chr10:22971944..22972725,4	MCF-7	breast:
7	chr10:22871846..22873549-chr10:22921498..22923484,2	K562	blood:
8	chr10:22919945..22923144-chr10:22969627..22972363,3	MCF-7	breast:
9	chr10:22921849..22923633-chr10:22927048..22928723,2	MCF-7	breast:
10	chr10:22909188..22910904-chr10:22920714..22923005,2	MCF-7	breast:
11	chr10:22898960..22901520-chr10:22921454..22923581,2	K562	blood:
12	chr10:22921231..22923695-chr10:22925990..22927982,2	MCF-7	breast:

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2559529	0.90[LWK][hapmap]
rs2765996	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs7076685	1.00[YRI][hapmap]
rs7084619	0.87[YRI][hapmap]
rs73600513	1.00[AMR][1000 genomes]
rs7898176	1.00[AMR][1000 genomes]
rs7911535	1.00[AMR][1000 genomes]
rs7918943	0.88[YRI][hapmap]
rs7922511	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22909800-22930400	Weak transcription	Fetal Stomach	stomach
2	chr10:22912800-22925600	Weak transcription	Pancreas	Pancrea
3	chr10:22912800-22929200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:22915000-22926200	Weak transcription	Fetal Heart	heart
5	chr10:22915000-22951800	Weak transcription	Fetal Intestine Small	intestine
6	chr10:22915200-22924000	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:22915200-22926600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr10:22915200-22935600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:22915200-22936200	Weak transcription	Psoas Muscle	Psoas
10	chr10:22915400-22935400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:22916000-22925000	Enhancers	Brain Cingulate Gyrus	brain
12	chr10:22917400-22928200	Enhancers	Brain Substantia Nigra	brain
13	chr10:22918800-22922600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr10:22919200-22931600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:22919600-22924600	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr10:22919800-22928200	Enhancers	Primary B cells from peripheral blood	blood
17	chr10:22919800-22935000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr10:22920000-22924400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:22920000-22925400	Enhancers	Primary T cells fromperipheralblood	blood
20	chr10:22920000-22927800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:22920000-22929800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr10:22920000-22929800	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr10:22920000-22931800	Weak transcription	Fetal Lung	lung
24	chr10:22920000-22931800	Weak transcription	NHLF	lung
25	chr10:22920000-22935000	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr10:22920000-22936400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr10:22920200-22922800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr10:22920200-22925600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr10:22920200-22927600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:22920200-22935200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr10:22920400-22923000	Weak transcription	Primary B cells from cord blood	blood
32	chr10:22920400-22923800	Weak transcription	Thymus	Thymus
33	chr10:22920400-22930600	Weak transcription	Aorta	Aorta
34	chr10:22920600-22924400	Weak transcription	Small Intestine	intestine
35	chr10:22920600-22929200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr10:22920600-22929200	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr10:22920800-22923000	Genic enhancers	Primary T cells from cord blood	blood
38	chr10:22920800-22924800	Enhancers	Brain Anterior Caudate	brain
39	chr10:22920800-22925200	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr10:22920800-22933600	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr10:22921000-22922800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr10:22921000-22922800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr10:22921000-22924000	Weak transcription	Duodenum Mucosa	Duodenum
44	chr10:22921000-22925200	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr10:22921000-22925800	Weak transcription	Fetal Thymus	thymus
46	chr10:22921000-22926400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr10:22921000-22929800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr10:22921000-22933000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr10:22921000-22940400	Weak transcription	Ovary	ovary
50	chr10:22921200-22922600	Enhancers	Primary T helper naive cells from peripheral blood	blood

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