Variant report

Variant	rs7922511
Chromosome Location	chr10:22778632-22778633
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16922454	0.82[AFR][1000 genomes]
rs2765996	1.00[YRI][hapmap]
rs7072792	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7076685	1.00[YRI][hapmap]
rs7084619	0.87[YRI][hapmap]
rs7898176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7911535	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7918943	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv982870	chr10:22770802-22778774	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22765800-22806600	Weak transcription	Right Atrium	heart
2	chr10:22771000-22780200	Weak transcription	Brain Angular Gyrus	brain
3	chr10:22771600-22779800	Weak transcription	Brain Substantia Nigra	brain
4	chr10:22775400-22779600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr10:22776800-22780600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr10:22778000-22778800	Enhancers	K562	blood
7	chr10:22778200-22778800	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr10:22778200-22779200	Enhancers	GM12878-XiMat	blood
9	chr10:22778400-22778800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:22778400-22778800	Enhancers	Stomach Mucosa	stomach
11	chr10:22778400-22779000	Enhancers	Primary B cells from peripheral blood	blood
12	chr10:22778600-22778800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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