Variant report

Variant	rs2913108
Chromosome Location	chr10:22887951-22887952
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10218845	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10828320	1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs1778302	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1778352	0.86[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2559520	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2559522	0.81[EUR][1000 genomes]
rs2559529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2765993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2765996	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2913109	0.80[CEU][hapmap];0.86[EUR][1000 genomes]
rs4498874	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4748819	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7075433	1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs7093543	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7099102	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72816826	0.84[ASN][1000 genomes]
rs7900517	0.88[CEU][hapmap];0.89[ASN][1000 genomes]
rs7907744	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7918943	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22825600-22888000	Weak transcription	HMEC	breast
2	chr10:22844200-22904800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:22856600-22899200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr10:22856800-22888200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:22857000-22888200	Weak transcription	Small Intestine	intestine
6	chr10:22858200-22904000	Weak transcription	Colonic Mucosa	Colon
7	chr10:22862400-22902000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:22866600-22893800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:22870200-22893400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr10:22870400-22895200	Weak transcription	HepG2	liver
11	chr10:22874000-22888200	Weak transcription	Placenta	Placenta
12	chr10:22875800-22888000	Weak transcription	Stomach Mucosa	stomach
13	chr10:22877200-22896400	Weak transcription	Fetal Intestine Large	intestine
14	chr10:22877400-22890200	Weak transcription	Right Ventricle	heart
15	chr10:22877600-22893400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:22879000-22894000	Genic enhancers	Primary T cells fromperipheralblood	blood
17	chr10:22879400-22888400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:22880000-22890600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr10:22880000-22906800	Weak transcription	Colon Smooth Muscle	Colon
20	chr10:22880200-22889400	Weak transcription	Aorta	Aorta
21	chr10:22880200-22890000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr10:22880200-22890400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr10:22880200-22893400	Weak transcription	Ovary	ovary
24	chr10:22880200-22893800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr10:22880200-22895200	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr10:22880200-22896200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:22880200-22897000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr10:22880400-22890400	Weak transcription	Fetal Intestine Small	intestine
29	chr10:22880400-22896600	Weak transcription	Liver	Liver
30	chr10:22880600-22893600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr10:22880800-22889400	Weak transcription	Esophagus	oesophagus
32	chr10:22880800-22890400	Weak transcription	Adipose Nuclei	Adipose
33	chr10:22880800-22893200	Weak transcription	Fetal Lung	lung
34	chr10:22881600-22890200	Weak transcription	Right Atrium	heart
35	chr10:22881800-22889200	Weak transcription	Thymus	Thymus
36	chr10:22881800-22893400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr10:22882200-22889200	Weak transcription	Lung	lung
38	chr10:22882200-22889200	Weak transcription	Dnd41	blood
39	chr10:22882200-22890200	Weak transcription	Fetal Muscle Trunk	muscle
40	chr10:22883200-22893800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr10:22883200-22894000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr10:22883200-22896200	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr10:22883200-22899200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr10:22884000-22888600	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr10:22885200-22888200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr10:22885200-22889400	Enhancers	Brain Cingulate Gyrus	brain
47	chr10:22885200-22891200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
48	chr10:22885200-22894000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr10:22885200-22896200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr10:22885400-22890400	Enhancers	Primary T helper naive cells from peripheral blood	blood

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