Variant report

Variant	rs7093543
Chromosome Location	chr10:22892263-22892264
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22891512..22893279-chr10:22903726..22905371,2	K562	blood:
2	chr10:22878984..22881572-chr10:22891106..22893611,2	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10218845	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10508651	0.94[GIH][hapmap]
rs10828320	1.00[CHB][hapmap];0.83[MKK][hapmap];0.83[ASN][1000 genomes]
rs12098721	0.88[GIH][hapmap]
rs12254366	0.90[EUR][1000 genomes]
rs12261508	0.84[GIH][hapmap]
rs16922479	0.84[GIH][hapmap]
rs16922539	0.94[GIH][hapmap]
rs16922560	0.94[GIH][hapmap]
rs16922564	0.88[GIH][hapmap]
rs16922578	0.94[GIH][hapmap]
rs1778302	1.00[CHB][hapmap];0.83[CHD][hapmap];0.94[ASN][1000 genomes]
rs1778352	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs2559520	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2559529	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2765993	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2765996	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2913108	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4498874	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4748819	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7075433	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs7075499	0.94[GIH][hapmap]
rs7090286	0.82[GIH][hapmap];1.00[MKK][hapmap]
rs7099102	1.00[ASN][1000 genomes]
rs72816826	0.94[ASN][1000 genomes]
rs7900517	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902016	0.94[GIH][hapmap]
rs7907744	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7912144	0.94[GIH][hapmap];0.81[TSI][hapmap]
rs7918943	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22844200-22904800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:22856600-22899200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:22858200-22904000	Weak transcription	Colonic Mucosa	Colon
4	chr10:22862400-22902000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:22866600-22893800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:22870200-22893400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:22870400-22895200	Weak transcription	HepG2	liver
8	chr10:22877200-22896400	Weak transcription	Fetal Intestine Large	intestine
9	chr10:22877600-22893400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr10:22879000-22894000	Genic enhancers	Primary T cells fromperipheralblood	blood
11	chr10:22880000-22906800	Weak transcription	Colon Smooth Muscle	Colon
12	chr10:22880200-22893400	Weak transcription	Ovary	ovary
13	chr10:22880200-22893800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr10:22880200-22895200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr10:22880200-22896200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:22880200-22897000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr10:22880400-22896600	Weak transcription	Liver	Liver
18	chr10:22880600-22893600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr10:22880800-22893200	Weak transcription	Fetal Lung	lung
20	chr10:22881800-22893400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:22883200-22893800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr10:22883200-22894000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr10:22883200-22896200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr10:22883200-22899200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:22885200-22894000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr10:22885200-22896200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr10:22886200-22893800	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr10:22886400-22892600	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr10:22886400-22894600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr10:22886600-22896800	Weak transcription	HSMMtube	muscle
31	chr10:22887000-22894200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr10:22887200-22902400	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr10:22888600-22892400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr10:22888600-22893600	Weak transcription	Small Intestine	intestine
35	chr10:22888600-22893800	Weak transcription	HMEC	breast
36	chr10:22888600-22895000	Weak transcription	Placenta	Placenta
37	chr10:22888800-22893000	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr10:22888800-22893200	Weak transcription	Duodenum Mucosa	Duodenum
39	chr10:22888800-22893600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr10:22888800-22893800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:22888800-22893800	Weak transcription	NHEK	skin
42	chr10:22888800-22895200	Weak transcription	A549	lung
43	chr10:22888800-22898000	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr10:22888800-22905000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr10:22889000-22893600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr10:22889000-22893800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr10:22889000-22893800	Weak transcription	NH-A	brain
48	chr10:22889000-22894000	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr10:22889000-22894000	Weak transcription	Osteobl	bone
50	chr10:22889000-22895400	Weak transcription	K562	blood

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