Variant report

Variant	rs16922578
Chromosome Location	chr10:22961707-22961708
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22957083..22958946-chr10:22960169..22962668,2	K562	blood:
2	chr10:22953862..22956737-chr10:22961647..22963471,2	K562	blood:
3	chr10:22952412..22956737-chr10:22961461..22963471,4	K562	blood:
4	chr10:22961298..22963622-chr10:23001897..23003526,2	K562	blood:
5	chr10:22960188..22962798-chr10:23001750..23003397,2	K562	blood:
6	chr10:22960345..22963141-chr10:22964742..22966276,2	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10159697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10159847	0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10218845	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10508650	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs10508651	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes]
rs10828320	1.00[JPT][hapmap]
rs11013103	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11013105	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11013106	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11592199	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12098721	0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs12255136	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12257665	1.00[CHB][hapmap]
rs12260163	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1624192	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1626919	0.81[CEU][hapmap]
rs1631873	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16922530	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16922539	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap]
rs16922560	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes]
rs16922564	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.85[ASN][1000 genomes]
rs16922566	0.85[ASN][1000 genomes]
rs16922580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17525760	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17526135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes]
rs1778302	1.00[JPT][hapmap]
rs1778317	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1778327	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35355312	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45484796	0.84[ASN][1000 genomes]
rs45496900	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs45520040	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45620939	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61228116	0.84[ASN][1000 genomes]
rs6482227	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6482228	1.00[JPT][hapmap]
rs7071198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075433	1.00[JPT][hapmap]
rs7075499	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7090286	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7093543	0.94[GIH][hapmap]
rs7100490	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7900517	1.00[JPT][hapmap]
rs7902016	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap]
rs7909660	0.85[ASN][1000 genomes]
rs7912144	0.89[GIH][hapmap]
rs7915780	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs997650	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22949000-22965000	Weak transcription	Right Atrium	heart
2	chr10:22949200-22969600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:22952000-22963000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:22952000-22970200	Weak transcription	Esophagus	oesophagus
5	chr10:22952400-22970000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:22955800-22962800	Weak transcription	Fetal Kidney	kidney
7	chr10:22955800-22970200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:22956000-22970400	Weak transcription	NHLF	lung
9	chr10:22956200-22968200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr10:22956200-22970200	Weak transcription	Liver	Liver
11	chr10:22956800-22967000	Enhancers	Brain Cingulate Gyrus	brain
12	chr10:22956800-22971600	Weak transcription	Primary B cells from cord blood	blood
13	chr10:22957200-22961800	Weak transcription	Lung	lung
14	chr10:22957400-22963200	Enhancers	Brain Germinal Matrix	brain
15	chr10:22958000-22963600	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr10:22958200-22962800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr10:22958200-22965200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:22958200-22967200	Enhancers	Brain Anterior Caudate	brain
19	chr10:22958400-22972200	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr10:22958600-22961800	Weak transcription	Psoas Muscle	Psoas
21	chr10:22958600-22971000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr10:22958600-22975400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr10:22958800-22968400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr10:22958800-22969800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr10:22958800-22969800	Weak transcription	Left Ventricle	heart
26	chr10:22959000-22961800	Weak transcription	GM12878-XiMat	blood
27	chr10:22959000-22964800	Enhancers	Primary T cells from cord blood	blood
28	chr10:22959000-22965000	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr10:22959000-22965200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr10:22959000-22968200	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr10:22959200-22961800	Weak transcription	Spleen	Spleen
32	chr10:22959200-22962200	Weak transcription	Fetal Muscle Trunk	muscle
33	chr10:22959200-22971600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr10:22959200-22971600	Weak transcription	Duodenum Mucosa	Duodenum
35	chr10:22959200-22980000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr10:22959400-22961800	Weak transcription	Primary B cells from peripheral blood	blood
37	chr10:22959400-22966800	Enhancers	Brain Hippocampus Middle	brain
38	chr10:22959600-22962000	Enhancers	NHDF-Ad	bronchial
39	chr10:22959800-22963400	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr10:22960000-22961800	Weak transcription	Dnd41	blood
41	chr10:22960000-22963600	Enhancers	H1 Cell Line	embryonic stem cell
42	chr10:22960000-22967600	Enhancers	Primary T cells fromperipheralblood	blood
43	chr10:22960000-22967600	Enhancers	Brain Substantia Nigra	brain
44	chr10:22960200-22962200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr10:22960200-22965000	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr10:22960200-22967400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr10:22960400-22962200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
48	chr10:22960400-22962400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr10:22960400-22962800	Weak transcription	Adipose Nuclei	Adipose
50	chr10:22960400-22963200	Enhancers	Primary hematopoietic stem cells	blood

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