The 2.0 version of rSNPBase

Variant report

Variant rs45496900
Chromosome Location chr10:22962872-22962873
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:96 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:22949000-22965000 Weak transcription Right Atrium heart
2 chr10:22949200-22969600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr10:22952000-22963000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
4 chr10:22952000-22970200 Weak transcription Esophagus oesophagus
5 chr10:22952400-22970000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr10:22955800-22970200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
7 chr10:22956000-22970400 Weak transcription NHLF lung
8 chr10:22956200-22968200 Enhancers Primary T killer naive cells fromperipheralblood blood
9 chr10:22956200-22970200 Weak transcription Liver Liver
10 chr10:22956800-22967000 Enhancers Brain Cingulate Gyrus brain
11 chr10:22956800-22971600 Weak transcription Primary B cells from cord blood blood
12 chr10:22957400-22963200 Enhancers Brain Germinal Matrix brain
13 chr10:22958000-22963600 Enhancers Brain Inferior Temporal Lobe brain
14 chr10:22958200-22965200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
15 chr10:22958200-22967200 Enhancers Brain Anterior Caudate brain
16 chr10:22958400-22972200 Enhancers Primary T helper cells fromperipheralblood blood
17 chr10:22958600-22971000 Enhancers Primary T helper naive cells fromperipheralblood blood
18 chr10:22958600-22975400 Enhancers Primary T regulatory cells fromperipheralblood blood
19 chr10:22958800-22968400 Enhancers Primary T helper 17 cells PMA-I stimulated --
20 chr10:22958800-22969800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
21 chr10:22958800-22969800 Weak transcription Left Ventricle heart
22 chr10:22959000-22964800 Enhancers Primary T cells from cord blood blood
23 chr10:22959000-22965000 Enhancers Primary T helper cells PMA-I stimulated --
24 chr10:22959000-22965200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
25 chr10:22959000-22968200 Enhancers Primary T helper naive cells from peripheral blood blood
26 chr10:22959200-22971600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
27 chr10:22959200-22971600 Weak transcription Duodenum Mucosa Duodenum
28 chr10:22959200-22980000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
29 chr10:22959400-22966800 Enhancers Brain Hippocampus Middle brain
30 chr10:22959800-22963400 Enhancers iPS-18 Cell Line embryonic stem cell
31 chr10:22960000-22963600 Enhancers H1 Cell Line embryonic stem cell
32 chr10:22960000-22967600 Enhancers Primary T cells fromperipheralblood blood
33 chr10:22960000-22967600 Enhancers Brain Substantia Nigra brain
34 chr10:22960200-22965000 Enhancers HUES64 Cell Line embryonic stem cell
35 chr10:22960200-22967400 Enhancers Primary Natural Killer cells fromperipheralblood blood
36 chr10:22960400-22963200 Enhancers Primary hematopoietic stem cells blood
37 chr10:22960400-22963400 Enhancers HUES6 Cell Line embryonic stem cell
38 chr10:22960400-22963600 Enhancers HUES48 Cell Line embryonic stem cell
39 chr10:22960600-22963000 Weak transcription Skeletal Muscle Female skeletal muscle
40 chr10:22960600-22964200 Weak transcription Small Intestine intestine
41 chr10:22960600-22964800 Weak transcription Thymus Thymus
42 chr10:22960600-22969800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
43 chr10:22960600-22971400 Weak transcription Right Ventricle heart
44 chr10:22960800-22963600 Enhancers iPS-15b Cell Line embryonic stem cell
45 chr10:22960800-22964400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
46 chr10:22961000-22963400 Enhancers ES-I3 Cell Line embryonic stem cell
47 chr10:22961000-22963800 Enhancers Primary hematopoietic stem cells short term culture blood
48 chr10:22961200-22964000 Enhancers Fetal Muscle Leg muscle
49 chr10:22961200-22964000 Enhancers HSMM muscle
50 chr10:22961200-22965400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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Last update: Aug 31, 2015