Variant report

Variant	rs7100490
Chromosome Location	chr10:22979173-22979174
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10159697	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10159847	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10218845	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10508650	1.00[JPT][hapmap]
rs10508651	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10828320	1.00[JPT][hapmap]
rs11013103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs11013104	0.85[CEU][hapmap];0.93[EUR][1000 genomes]
rs11013105	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592199	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12098721	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12255136	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12257665	1.00[CHB][hapmap]
rs12260163	0.84[ASN][1000 genomes]
rs1624192	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1626919	0.84[CEU][hapmap]
rs1631873	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16922530	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16922539	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16922560	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16922564	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16922578	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16922580	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16922586	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17525760	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17526135	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1778302	1.00[JPT][hapmap]
rs1778317	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1778327	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35355312	0.84[ASN][1000 genomes]
rs45484796	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45496900	1.00[ASN][1000 genomes]
rs45520040	0.84[ASN][1000 genomes]
rs45620939	1.00[ASN][1000 genomes]
rs58727843	0.81[EUR][1000 genomes]
rs61228116	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482227	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482228	1.00[JPT][hapmap]
rs7071198	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7075433	1.00[JPT][hapmap]
rs7075499	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7090286	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7900517	1.00[JPT][hapmap]
rs7902016	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7915780	0.84[ASN][1000 genomes]
rs7919243	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7924019	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs997650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22959200-22980000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:22961800-22979600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:22970600-22989000	Weak transcription	Esophagus	oesophagus
4	chr10:22972600-22983600	Enhancers	Brain Substantia Nigra	brain
5	chr10:22972600-23000200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr10:22972800-22990000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:22972800-22999400	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr10:22973000-22988200	Weak transcription	Aorta	Aorta
9	chr10:22973000-22990000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr10:22973000-22997600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr10:22973000-22999200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr10:22973200-22979600	Weak transcription	Osteobl	bone
13	chr10:22973200-22981600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr10:22973200-22987400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr10:22973200-22989400	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr10:22973800-22979400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr10:22973800-22979600	Weak transcription	HMEC	breast
18	chr10:22973800-22979800	Weak transcription	Pancreas	Pancrea
19	chr10:22973800-22985800	Weak transcription	Fetal Heart	heart
20	chr10:22974000-22979400	Weak transcription	Liver	Liver
21	chr10:22974000-22979400	Weak transcription	Fetal Lung	lung
22	chr10:22974000-22979600	Weak transcription	NHLF	lung
23	chr10:22974000-22979800	Weak transcription	Primary B cells from cord blood	blood
24	chr10:22974000-22985400	Weak transcription	Colon Smooth Muscle	Colon
25	chr10:22974600-22979800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr10:22974600-22980000	Weak transcription	Stomach Mucosa	stomach
27	chr10:22974600-22980600	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr10:22974600-22982600	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr10:22974800-22979800	Weak transcription	Lung	lung
30	chr10:22974800-22979800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr10:22974800-22980000	Weak transcription	Small Intestine	intestine
32	chr10:22974800-22981000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr10:22974800-22981200	Weak transcription	Right Atrium	heart
34	chr10:22974800-22988200	Weak transcription	Duodenum Mucosa	Duodenum
35	chr10:22974800-22988400	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr10:22975000-22979800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr10:22975000-22980000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr10:22975000-22982600	Weak transcription	Gastric	stomach
39	chr10:22975200-22979400	Weak transcription	Primary hematopoietic stem cells	blood
40	chr10:22975200-22979400	Weak transcription	NHDF-Ad	bronchial
41	chr10:22975200-22979800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr10:22975200-22979800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr10:22975400-22979200	Weak transcription	A549	lung
44	chr10:22975400-22979600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr10:22975400-22979800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr10:22975600-22979200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr10:22975600-22979400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr10:22975600-22979400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:22975600-22979600	Weak transcription	Spleen	Spleen
50	chr10:22975600-23001200	Weak transcription	Colonic Mucosa	Colon

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