Variant report

Variant	rs10159847
Chromosome Location	chr10:22966606-22966607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22964954..22967135-chr10:22975268..22977961,2	MCF-7	breast:
2	chr10:22964242..22966769-chr10:22976962..22978693,2	K562	blood:
3	chr10:22957484..22960140-chr10:22963875..22966697,2	K562	blood:
4	chr10:22915419..22921147-chr10:22965660..22970538,6	K562	blood:
5	chr10:22966497..22969699-chr10:23002179..23004724,3	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10159697	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10218845	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10508650	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs10508651	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10828320	1.00[JPT][hapmap]
rs11013095	0.84[LWK][hapmap];0.84[MKK][hapmap];0.92[YRI][hapmap]
rs11013103	0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap]
rs11013104	0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs11013105	0.82[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11013106	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11592199	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1171500	0.81[YRI][hapmap]
rs12098721	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12255136	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12257665	1.00[CHB][hapmap]
rs12260163	1.00[ASN][1000 genomes]
rs1624192	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1626919	0.91[CEU][hapmap]
rs1631873	0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap]
rs16922530	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16922539	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16922560	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16922564	0.81[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16922566	0.85[ASN][1000 genomes]
rs16922578	0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16922580	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16922586	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1750770	0.84[CEU][hapmap];0.87[GIH][hapmap];0.96[TSI][hapmap]
rs17525760	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17526135	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1778302	0.87[GIH][hapmap];1.00[JPT][hapmap]
rs1778317	0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs1778327	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2559520	0.85[CHD][hapmap];0.87[GIH][hapmap]
rs2559523	0.83[GIH][hapmap]
rs2559524	0.83[GIH][hapmap]
rs2559529	0.85[CHD][hapmap];0.91[GIH][hapmap]
rs2765993	0.85[CHD][hapmap];0.87[GIH][hapmap]
rs2765996	0.85[CHD][hapmap];0.91[GIH][hapmap]
rs2913109	0.83[GIH][hapmap]
rs35355312	1.00[ASN][1000 genomes]
rs45484796	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs45496900	0.84[ASN][1000 genomes]
rs45520040	1.00[ASN][1000 genomes]
rs45620939	0.84[ASN][1000 genomes]
rs58727843	0.92[EUR][1000 genomes]
rs61228116	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6482227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.84[YRI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6482228	1.00[JPT][hapmap]
rs7071198	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7075433	1.00[JPT][hapmap]
rs7075499	0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7090286	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7100490	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7900517	1.00[JPT][hapmap]
rs7902016	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7907744	0.83[GIH][hapmap]
rs7909660	0.85[ASN][1000 genomes]
rs7915780	1.00[ASN][1000 genomes]
rs7919243	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7924019	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs997650	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22949200-22969600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:22952000-22970200	Weak transcription	Esophagus	oesophagus
3	chr10:22952400-22970000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:22955800-22970200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:22956000-22970400	Weak transcription	NHLF	lung
6	chr10:22956200-22968200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr10:22956200-22970200	Weak transcription	Liver	Liver
8	chr10:22956800-22967000	Enhancers	Brain Cingulate Gyrus	brain
9	chr10:22956800-22971600	Weak transcription	Primary B cells from cord blood	blood
10	chr10:22958200-22967200	Enhancers	Brain Anterior Caudate	brain
11	chr10:22958400-22972200	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr10:22958600-22971000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr10:22958600-22975400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr10:22958800-22968400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr10:22958800-22969800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr10:22958800-22969800	Weak transcription	Left Ventricle	heart
17	chr10:22959000-22968200	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr10:22959200-22971600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr10:22959200-22971600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr10:22959200-22980000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:22959400-22966800	Enhancers	Brain Hippocampus Middle	brain
22	chr10:22960000-22967600	Enhancers	Primary T cells fromperipheralblood	blood
23	chr10:22960000-22967600	Enhancers	Brain Substantia Nigra	brain
24	chr10:22960200-22967400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr10:22960600-22969800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr10:22960600-22971400	Weak transcription	Right Ventricle	heart
27	chr10:22961400-22966800	Enhancers	Brain Angular Gyrus	brain
28	chr10:22961800-22979600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr10:22962000-22969400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr10:22962000-22969600	Weak transcription	Aorta	Aorta
31	chr10:22962200-22968400	Weak transcription	HepG2	liver
32	chr10:22962200-22969400	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr10:22962200-22969600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr10:22962200-22969600	Weak transcription	HMEC	breast
35	chr10:22962200-22971400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr10:22962200-22971600	Weak transcription	Spleen	Spleen
37	chr10:22962400-22968600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr10:22962600-22974600	Weak transcription	Fetal Muscle Trunk	muscle
39	chr10:22963200-22966800	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr10:22963200-22968200	Weak transcription	GM12878-XiMat	blood
41	chr10:22963200-22969400	Weak transcription	A549	lung
42	chr10:22963200-22969600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr10:22963200-22970200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr10:22963200-22970800	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr10:22963200-22971000	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr10:22963200-22971400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr10:22963200-22972600	Weak transcription	Adipose Nuclei	Adipose
48	chr10:22963400-22969400	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr10:22963400-22970200	Weak transcription	NHDF-Ad	bronchial
50	chr10:22963600-22968600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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