Variant report

Variant	rs7900517
Chromosome Location	chr10:22898087-22898088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10159697	1.00[JPT][hapmap]
rs10159847	1.00[JPT][hapmap]
rs10218845	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10508650	1.00[JPT][hapmap]
rs10508651	1.00[JPT][hapmap]
rs10828320	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11013103	1.00[JPT][hapmap]
rs11013105	1.00[JPT][hapmap]
rs11013106	1.00[JPT][hapmap]
rs11592199	1.00[JPT][hapmap]
rs12098721	1.00[JPT][hapmap]
rs12254366	0.89[EUR][1000 genomes]
rs12255136	1.00[JPT][hapmap]
rs1624192	1.00[JPT][hapmap]
rs1631873	1.00[JPT][hapmap]
rs16922530	1.00[JPT][hapmap]
rs16922539	1.00[JPT][hapmap]
rs16922560	1.00[JPT][hapmap]
rs16922564	1.00[JPT][hapmap]
rs16922578	1.00[JPT][hapmap]
rs16922580	1.00[JPT][hapmap]
rs16922586	1.00[JPT][hapmap]
rs17525760	1.00[JPT][hapmap]
rs17526135	1.00[JPT][hapmap]
rs1778302	1.00[JPT][hapmap];0.84[YRI][hapmap];0.94[ASN][1000 genomes]
rs1778317	1.00[JPT][hapmap]
rs1778327	1.00[JPT][hapmap]
rs1778344	0.92[YRI][hapmap]
rs1778352	0.86[CEU][hapmap];0.83[YRI][hapmap];1.00[ASN][1000 genomes]
rs2559520	1.00[ASN][1000 genomes]
rs2559529	0.88[CEU][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2765993	0.88[CEU][hapmap];0.89[ASN][1000 genomes]
rs2765996	0.89[ASN][1000 genomes]
rs2913108	0.88[CEU][hapmap]
rs4498874	1.00[ASN][1000 genomes]
rs4748819	1.00[ASN][1000 genomes]
rs6482227	1.00[JPT][hapmap]
rs6482228	1.00[JPT][hapmap]
rs7071198	1.00[JPT][hapmap]
rs7075433	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7075499	1.00[JPT][hapmap]
rs7090286	1.00[JPT][hapmap]
rs7093543	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099102	1.00[ASN][1000 genomes]
rs7100490	1.00[JPT][hapmap]
rs72816826	0.94[ASN][1000 genomes]
rs7902016	1.00[JPT][hapmap]
rs7907744	1.00[ASN][1000 genomes]
rs7918943	0.87[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919243	1.00[JPT][hapmap]
rs7924019	1.00[JPT][hapmap]
rs997650	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22844200-22904800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:22856600-22899200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:22858200-22904000	Weak transcription	Colonic Mucosa	Colon
4	chr10:22862400-22902000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:22880000-22906800	Weak transcription	Colon Smooth Muscle	Colon
6	chr10:22883200-22899200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:22887200-22902400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr10:22888800-22905000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr10:22889400-22904400	Weak transcription	Hela-S3	cervix
10	chr10:22891000-22901400	Weak transcription	Gastric	stomach
11	chr10:22891000-22904800	Weak transcription	Right Ventricle	heart
12	chr10:22891200-22904800	Weak transcription	NHLF	lung
13	chr10:22893600-22902000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr10:22894000-22898800	Weak transcription	Spleen	Spleen
15	chr10:22894000-22902600	Weak transcription	Right Atrium	heart
16	chr10:22894000-22906600	Weak transcription	Ovary	ovary
17	chr10:22894200-22898400	Weak transcription	Small Intestine	intestine
18	chr10:22894200-22904600	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr10:22894600-22899000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr10:22894600-22903000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:22894600-22904400	Weak transcription	NHDF-Ad	bronchial
22	chr10:22894600-22904600	Weak transcription	NHEK	skin
23	chr10:22894600-22905000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr10:22894800-22899400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr10:22894800-22904600	Weak transcription	Adipose Nuclei	Adipose
26	chr10:22894800-22913000	Weak transcription	Fetal Kidney	kidney
27	chr10:22895200-22898400	Genic enhancers	Brain Anterior Caudate	brain
28	chr10:22895200-22899200	Genic enhancers	Primary T cells fromperipheralblood	blood
29	chr10:22895400-22898200	Genic enhancers	Brain Inferior Temporal Lobe	brain
30	chr10:22895400-22899400	Genic enhancers	Brain Hippocampus Middle	brain
31	chr10:22895400-22904600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr10:22895600-22898600	Strong transcription	Thymus	Thymus
33	chr10:22895600-22899400	Weak transcription	HepG2	liver
34	chr10:22895600-22901000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr10:22895600-22902000	Weak transcription	Pancreas	Pancrea
36	chr10:22895600-22902200	Weak transcription	Placenta	Placenta
37	chr10:22895600-22906000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr10:22895800-22899000	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr10:22895800-22900200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr10:22895800-22904600	Weak transcription	HUVEC	blood vessel
41	chr10:22895800-22904800	Weak transcription	NH-A	brain
42	chr10:22896000-22899000	Strong transcription	Fetal Thymus	thymus
43	chr10:22896000-22899800	Strong transcription	K562	blood
44	chr10:22896000-22902600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr10:22896200-22898200	Genic enhancers	Primary B cells from peripheral blood	blood
46	chr10:22896200-22898200	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr10:22896200-22898600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr10:22896200-22898600	Strong transcription	Stomach Smooth Muscle	stomach
49	chr10:22896200-22899000	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr10:22896200-22899600	Genic enhancers	Primary T helper cells PMA-I stimulated	--

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