Variant report

Variant	rs17526135
Chromosome Location	chr10:22946874-22946875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22944721..22947461-chr10:23031170..23034103,2	MCF-7	breast:
2	chr10:22904770..22906402-chr10:22945960..22948214,2	K562	blood:
3	chr10:22941879..22944846-chr10:22946582..22948906,3	K562	blood:
4	chr10:22920613..22922512-chr10:22946643..22949498,2	MCF-7	breast:
5	chr10:22945388..22947993-chr10:22991036..22993292,2	K562	blood:
6	chr10:22946500..22949135-chr10:23002832..23004603,2	K562	blood:
7	chr10:22937993..22940131-chr10:22944693..22947159,2	K562	blood:
8	chr10:22945163..22950569-chr10:22953734..22956950,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10159697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10159847	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10218845	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10508650	0.90[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10508651	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828320	1.00[JPT][hapmap]
rs11013103	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11013105	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11013106	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11592199	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12098721	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12255136	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12257665	1.00[CHB][hapmap]
rs1624192	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1626919	0.82[CEU][hapmap]
rs1631873	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16922529	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16922530	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16922539	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16922560	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16922564	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16922566	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16922578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes]
rs16922580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16922586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1750759	0.91[ASN][1000 genomes]
rs17525760	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1778302	1.00[JPT][hapmap]
rs1778317	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1778327	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs45484796	0.82[ASN][1000 genomes]
rs45496900	0.95[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs45620939	0.82[ASN][1000 genomes]
rs59403140	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61228116	0.82[ASN][1000 genomes]
rs61531925	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6482227	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6482228	1.00[JPT][hapmap]
rs7071198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes]
rs7075433	1.00[JPT][hapmap]
rs7075499	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7090286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7100490	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7900517	1.00[JPT][hapmap]
rs7902016	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7909660	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7915780	0.84[AMR][1000 genomes]
rs7919243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes]
rs7924019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs997650	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22915000-22951800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:22929600-22948400	Enhancers	Brain Cingulate Gyrus	brain
3	chr10:22935200-22953000	Enhancers	Brain Substantia Nigra	brain
4	chr10:22936400-22958000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:22937800-22947800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr10:22937800-22951200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:22937800-22955200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr10:22938200-22947800	Weak transcription	NH-A	brain
9	chr10:22938800-22949400	Weak transcription	HMEC	breast
10	chr10:22938800-22949600	Weak transcription	NHEK	skin
11	chr10:22939000-22947600	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr10:22940800-22951800	Weak transcription	Left Ventricle	heart
13	chr10:22941000-22947800	Weak transcription	HepG2	liver
14	chr10:22941600-22949200	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr10:22942000-22952800	Enhancers	Brain Hippocampus Middle	brain
16	chr10:22942400-22947400	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr10:22942400-22947600	Weak transcription	Adipose Nuclei	Adipose
18	chr10:22942400-22959800	Weak transcription	Right Ventricle	heart
19	chr10:22942600-22947400	Weak transcription	Dnd41	blood
20	chr10:22942600-22947600	Weak transcription	K562	blood
21	chr10:22942600-22949200	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr10:22942600-22949400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:22942800-22947800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:22943200-22948200	Enhancers	Brain Anterior Caudate	brain
25	chr10:22943400-22948600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr10:22943400-22952200	Enhancers	Brain Angular Gyrus	brain
27	chr10:22943800-22949400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr10:22944200-22948600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr10:22944600-22947000	Enhancers	Fetal Heart	heart
30	chr10:22944800-22947000	Enhancers	Thymus	Thymus
31	chr10:22944800-22947200	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr10:22944800-22948800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr10:22944800-22951600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr10:22944800-22951800	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr10:22945000-22947400	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr10:22945000-22947600	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr10:22945000-22947600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr10:22945000-22947600	Weak transcription	NHDF-Ad	bronchial
39	chr10:22945000-22947800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr10:22945000-22947800	Weak transcription	Right Atrium	heart
41	chr10:22945000-22948400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr10:22945000-22950400	Weak transcription	Liver	Liver
43	chr10:22945000-22951800	Weak transcription	Esophagus	oesophagus
44	chr10:22945000-22955200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr10:22945000-22955200	Enhancers	Primary T helper cells fromperipheralblood	blood
46	chr10:22945000-22955200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
47	chr10:22945000-22955200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr10:22945000-22955400	Weak transcription	Duodenum Mucosa	Duodenum
49	chr10:22945000-22956800	Weak transcription	Gastric	stomach
50	chr10:22945000-22958000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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