Variant report

Variant	rs7915780
Chromosome Location	chr10:22955011-22955012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22954452..22957400-chr10:23343036..23345411,3	K562	blood:
2	chr10:22945163..22950569-chr10:22953734..22956950,6	K562	blood:
3	chr10:22952412..22956737-chr10:22961461..22963471,4	K562	blood:
4	chr10:22954085..22955881-chr10:22969545..22973376,3	K562	blood:
5	chr10:22919642..22922438-chr10:22953063..22955588,2	K562	blood:
6	chr10:22953464..22956481-chr10:22999741..23002398,3	K562	blood:
7	chr10:22953862..22956737-chr10:22961647..22963471,2	K562	blood:
8	chr10:22949069..22952747-chr10:22952895..22957056,4	K562	blood:
9	chr10:22953464..22955695-chr10:22999741..23002001,2	K562	blood:
10	chr10:22953483..22956745-chr10:22958221..22961300,4	K562	blood:
11	chr10:22954452..22957017-chr10:23343036..23345890,3	K562	blood:
12	chr10:22917275..22920741-chr10:22954004..22956837,4	K562	blood:

No data

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10159697	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10159847	1.00[ASN][1000 genomes]
rs10508650	1.00[CHB][hapmap]
rs10508651	0.89[AMR][1000 genomes]
rs11013105	0.84[ASN][1000 genomes]
rs11013106	0.84[ASN][1000 genomes]
rs12098721	0.88[AMR][1000 genomes]
rs12260163	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922560	0.88[AMR][1000 genomes]
rs16922564	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16922566	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16922578	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922580	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922586	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17526135	0.84[AMR][1000 genomes]
rs35355312	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45484796	0.84[ASN][1000 genomes]
rs45496900	0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs45520040	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45620939	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61228116	0.84[ASN][1000 genomes]
rs6482227	0.84[ASN][1000 genomes]
rs7071198	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075499	0.92[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7090286	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7100490	0.84[ASN][1000 genomes]
rs7909660	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7919243	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924019	0.92[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs997650	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22936400-22958000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:22937800-22955200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr10:22942400-22959800	Weak transcription	Right Ventricle	heart
4	chr10:22945000-22955200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr10:22945000-22955200	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr10:22945000-22955200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr10:22945000-22955200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr10:22945000-22955400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:22945000-22956800	Weak transcription	Gastric	stomach
10	chr10:22945000-22958000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr10:22945200-22955200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:22945400-22955400	Weak transcription	Fetal Kidney	kidney
13	chr10:22945400-22958400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr10:22946200-22961600	Weak transcription	Aorta	Aorta
15	chr10:22947400-22955400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr10:22948000-22961400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr10:22948200-22955600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr10:22948200-22958400	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:22949000-22959800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr10:22949000-22965000	Weak transcription	Right Atrium	heart
21	chr10:22949200-22955400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:22949200-22956800	Weak transcription	Lung	lung
23	chr10:22949200-22958200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr10:22949200-22969600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr10:22949600-22955400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr10:22949800-22955200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr10:22949800-22960600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr10:22950000-22961400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr10:22950200-22955200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr10:22950400-22955200	Weak transcription	Primary B cells from peripheral blood	blood
31	chr10:22952000-22963000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr10:22952000-22970200	Weak transcription	Esophagus	oesophagus
33	chr10:22952200-22955200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr10:22952200-22955200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr10:22952200-22955400	Weak transcription	Brain Angular Gyrus	brain
36	chr10:22952200-22955400	Weak transcription	Brain Anterior Caudate	brain
37	chr10:22952200-22955400	Weak transcription	Fetal Intestine Small	intestine
38	chr10:22952200-22955400	Weak transcription	NHLF	lung
39	chr10:22952200-22958200	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr10:22952200-22960400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr10:22952400-22955200	Weak transcription	Liver	Liver
42	chr10:22952400-22955200	Weak transcription	Brain Cingulate Gyrus	brain
43	chr10:22952400-22955200	Weak transcription	A549	lung
44	chr10:22952400-22955400	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr10:22952400-22955400	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr10:22952400-22955400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr10:22952400-22961400	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr10:22952400-22970000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr10:22952800-22955200	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr10:22952800-22955200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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