The 2.0 version of rSNPBase

Variant report

Variant rs12260163
Chromosome Location chr10:22960407-22960408
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:95 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:22946200-22961600 Weak transcription Aorta Aorta
2 chr10:22948000-22961400 Weak transcription H9 Cell Line embryonic stem cell
3 chr10:22949000-22965000 Weak transcription Right Atrium heart
4 chr10:22949200-22969600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr10:22949800-22960600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
6 chr10:22950000-22961400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr10:22952000-22963000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr10:22952000-22970200 Weak transcription Esophagus oesophagus
9 chr10:22952400-22961400 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr10:22952400-22970000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr10:22955800-22962800 Weak transcription Fetal Kidney kidney
12 chr10:22955800-22970200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
13 chr10:22956000-22970400 Weak transcription NHLF lung
14 chr10:22956200-22961600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
15 chr10:22956200-22968200 Enhancers Primary T killer naive cells fromperipheralblood blood
16 chr10:22956200-22970200 Weak transcription Liver Liver
17 chr10:22956400-22961400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
18 chr10:22956800-22967000 Enhancers Brain Cingulate Gyrus brain
19 chr10:22956800-22971600 Weak transcription Primary B cells from cord blood blood
20 chr10:22957000-22961000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
21 chr10:22957200-22961800 Weak transcription Lung lung
22 chr10:22957400-22963200 Enhancers Brain Germinal Matrix brain
23 chr10:22958000-22963600 Enhancers Brain Inferior Temporal Lobe brain
24 chr10:22958200-22962800 Weak transcription Duodenum Smooth Muscle Duodenum
25 chr10:22958200-22965200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
26 chr10:22958200-22967200 Enhancers Brain Anterior Caudate brain
27 chr10:22958400-22972200 Enhancers Primary T helper cells fromperipheralblood blood
28 chr10:22958600-22961600 Enhancers Primary T killer memory cells from peripheral blood blood
29 chr10:22958600-22961600 Weak transcription HepG2 liver
30 chr10:22958600-22961800 Weak transcription Psoas Muscle Psoas
31 chr10:22958600-22971000 Enhancers Primary T helper naive cells fromperipheralblood blood
32 chr10:22958600-22975400 Enhancers Primary T regulatory cells fromperipheralblood blood
33 chr10:22958800-22961000 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
34 chr10:22958800-22961200 Enhancers K562 blood
35 chr10:22958800-22961400 Weak transcription A549 lung
36 chr10:22958800-22961600 Weak transcription ES-WA7 Cell Line embryonic stem cell
37 chr10:22958800-22961600 Weak transcription Primary neutrophils fromperipheralblood blood
38 chr10:22958800-22961600 Weak transcription Sigmoid Colon Sigmoid Colon
39 chr10:22958800-22968400 Enhancers Primary T helper 17 cells PMA-I stimulated --
40 chr10:22958800-22969800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
41 chr10:22958800-22969800 Weak transcription Left Ventricle heart
42 chr10:22959000-22961000 Weak transcription iPS-20b Cell Line embryonic stem cell
43 chr10:22959000-22961400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
44 chr10:22959000-22961400 Weak transcription Hela-S3 cervix
45 chr10:22959000-22961600 Weak transcription NHEK skin
46 chr10:22959000-22961800 Weak transcription GM12878-XiMat blood
47 chr10:22959000-22964800 Enhancers Primary T cells from cord blood blood
48 chr10:22959000-22965000 Enhancers Primary T helper cells PMA-I stimulated --
49 chr10:22959000-22965200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
50 chr10:22959000-22968200 Enhancers Primary T helper naive cells from peripheral blood blood

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Last update: Aug 31, 2015