Variant report

Variant	rs58727843
Chromosome Location	chr10:22970394-22970395
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22609177..22611427-chr10:22969664..22971325,2	K562	blood:
2	chr10:22919945..22923144-chr10:22969627..22972363,3	MCF-7	breast:
3	chr10:22954085..22955881-chr10:22969545..22973376,3	K562	blood:
4	chr10:22869571..22871999-chr10:22969566..22972174,2	MCF-7	breast:
5	chr10:22968680..22970834-chr10:22971018..22973569,2	K562	blood:
6	chr10:22969619..22972565-chr10:22986340..22989561,5	K562	blood:
7	chr10:22947999..22952068-chr10:22969856..22973732,4	MCF-7	breast:
8	chr10:22969549..22974031-chr10:22999027..23004713,8	MCF-7	breast:
9	chr10:22942890..22944748-chr10:22969639..22971287,2	MCF-7	breast:
10	chr10:22969827..22972889-chr10:22996962..23000466,4	K562	blood:
11	chr10:22969199..22970823-chr10:23343387..23344922,2	K562	blood:
12	chr10:22915419..22921147-chr10:22965660..22970538,6	K562	blood:
13	chr10:22969199..22971495-chr10:23343422..23346114,2	K562	blood:
14	chr10:22947375..22950268-chr10:22969156..22971438,2	K562	blood:
15	chr10:22919228..22920825-chr10:22969587..22972202,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000168283	Chromatin interaction
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10159847	0.92[EUR][1000 genomes]
rs11013104	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11013105	0.81[EUR][1000 genomes]
rs11013106	0.81[EUR][1000 genomes]
rs12249907	0.84[ASN][1000 genomes]
rs35360085	0.80[AFR][1000 genomes]
rs45484796	0.81[EUR][1000 genomes]
rs61228116	0.81[EUR][1000 genomes]
rs6482227	0.86[EUR][1000 genomes]
rs7079078	0.85[ASN][1000 genomes]
rs7100490	0.81[EUR][1000 genomes]
rs997650	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22956000-22970400	Weak transcription	NHLF	lung
2	chr10:22956800-22971600	Weak transcription	Primary B cells from cord blood	blood
3	chr10:22958400-22972200	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr10:22958600-22971000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr10:22958600-22975400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr10:22959200-22971600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr10:22959200-22971600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr10:22959200-22980000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:22960600-22971400	Weak transcription	Right Ventricle	heart
10	chr10:22961800-22979600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr10:22962200-22971400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr10:22962200-22971600	Weak transcription	Spleen	Spleen
13	chr10:22962600-22974600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr10:22963200-22970800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr10:22963200-22971000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr10:22963200-22971400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:22963200-22972600	Weak transcription	Adipose Nuclei	Adipose
18	chr10:22964000-22971600	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:22964000-22973600	Weak transcription	Psoas Muscle	Psoas
20	chr10:22964200-22971000	Weak transcription	HSMMtube	muscle
21	chr10:22965200-22971200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr10:22965600-22971600	Weak transcription	Fetal Kidney	kidney
23	chr10:22966000-22971400	Enhancers	Dnd41	blood
24	chr10:22966600-22971400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr10:22967200-22971000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr10:22968200-22970800	Enhancers	K562	blood
27	chr10:22968200-22971200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr10:22968200-22973000	Enhancers	HUVEC	blood vessel
29	chr10:22968400-22970400	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr10:22968400-22970800	Enhancers	HepG2	liver
31	chr10:22968400-22971600	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr10:22968400-22973600	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr10:22968400-22976000	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr10:22968600-22970400	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr10:22968600-22970400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr10:22968800-22970800	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr10:22968800-22971000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr10:22968800-22971600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr10:22969200-22970400	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr10:22969200-22970400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr10:22969200-22971600	Enhancers	Primary B cells from peripheral blood	blood
42	chr10:22969200-22971600	Enhancers	Primary T cells fromperipheralblood	blood
43	chr10:22969400-22970400	Enhancers	H9 Cell Line	embryonic stem cell
44	chr10:22969400-22970400	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr10:22969400-22970400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr10:22969400-22970800	Enhancers	H1 Cell Line	embryonic stem cell
47	chr10:22969400-22971000	Enhancers	Fetal Thymus	thymus
48	chr10:22969400-22971000	Enhancers	Thymus	Thymus
49	chr10:22969400-22976600	Enhancers	Brain Cingulate Gyrus	brain
50	chr10:22969600-22970600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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