Variant report

Variant	rs11013095
Chromosome Location	chr10:22971463-22971464
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22919945..22923144-chr10:22969627..22972363,3	MCF-7	breast:
2	chr10:22912213..22914953-chr10:22971125..22973700,2	MCF-7	breast:
3	chr10:22954085..22955881-chr10:22969545..22973376,3	K562	blood:
4	chr10:22869571..22871999-chr10:22969566..22972174,2	MCF-7	breast:
5	chr10:22970714..22972337-chr10:23340303..23342897,2	K562	blood:
6	chr10:22970742..22972969-chr10:23383375..23385316,2	MCF-7	breast:
7	chr10:22969619..22972565-chr10:22986340..22989561,5	K562	blood:
8	chr10:22970833..22976396-chr10:22998694..23005048,8	K562	blood:
9	chr10:22947999..22952068-chr10:22969856..22973732,4	MCF-7	breast:
10	chr10:22969549..22974031-chr10:22999027..23004713,8	MCF-7	breast:
11	chr10:22969827..22972889-chr10:22996962..23000466,4	K562	blood:
12	chr10:22918230..22923281-chr10:22970702..22974726,7	K562	blood:
13	chr10:22915388..22917585-chr10:22971336..22974325,2	MCF-7	breast:
14	chr10:22970725..22973853-chr10:23334957..23339214,5	K562	blood:
15	chr10:22969199..22971495-chr10:23343422..23346114,2	K562	blood:
16	chr10:22907517..22909327-chr10:22970416..22973310,2	MCF-7	breast:
17	chr10:22968680..22970834-chr10:22971018..22973569,2	K562	blood:
18	chr10:22920959..22922895-chr10:22971419..22973698,3	MCF-7	breast:
19	chr10:22919228..22920825-chr10:22969587..22972202,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction
ENSG00000148450	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10159847	0.84[LWK][hapmap];0.84[MKK][hapmap];0.92[YRI][hapmap]
rs11013103	1.00[JPT][hapmap]
rs11592199	0.81[MEX][hapmap]
rs1171496	0.89[CEU][hapmap]
rs1171500	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1171505	0.88[CEU][hapmap];0.91[GIH][hapmap];0.93[TSI][hapmap]
rs2765997	0.81[CEU][hapmap]
rs35630731	0.93[EUR][1000 genomes]
rs4748818	1.00[JPT][hapmap]
rs6482227	0.92[YRI][hapmap]
rs6482228	0.86[CHB][hapmap];0.85[CHD][hapmap];0.81[MEX][hapmap];0.92[ASN][1000 genomes]
rs7895928	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22956800-22971600	Weak transcription	Primary B cells from cord blood	blood
2	chr10:22958400-22972200	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr10:22958600-22975400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr10:22959200-22971600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr10:22959200-22971600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr10:22959200-22980000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:22961800-22979600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:22962200-22971600	Weak transcription	Spleen	Spleen
9	chr10:22962600-22974600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr10:22963200-22972600	Weak transcription	Adipose Nuclei	Adipose
11	chr10:22964000-22971600	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:22964000-22973600	Weak transcription	Psoas Muscle	Psoas
13	chr10:22965600-22971600	Weak transcription	Fetal Kidney	kidney
14	chr10:22968200-22973000	Enhancers	HUVEC	blood vessel
15	chr10:22968400-22971600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr10:22968400-22973600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr10:22968400-22976000	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr10:22968800-22971600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr10:22969200-22971600	Enhancers	Primary B cells from peripheral blood	blood
20	chr10:22969200-22971600	Enhancers	Primary T cells fromperipheralblood	blood
21	chr10:22969400-22976600	Enhancers	Brain Cingulate Gyrus	brain
22	chr10:22969600-22971600	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr10:22969600-22972200	Enhancers	NHEK	skin
24	chr10:22969600-22973200	Enhancers	NH-A	brain
25	chr10:22969800-22971600	Enhancers	Brain Hippocampus Middle	brain
26	chr10:22969800-22971600	Enhancers	Brain Substantia Nigra	brain
27	chr10:22969800-22971800	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr10:22969800-22974000	Enhancers	Brain Angular Gyrus	brain
29	chr10:22969800-22975200	Enhancers	Primary hematopoietic stem cells	blood
30	chr10:22969800-22975200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr10:22969800-22975600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr10:22969800-22976000	Enhancers	Brain Anterior Caudate	brain
33	chr10:22970000-22971600	Weak transcription	Aorta	Aorta
34	chr10:22970000-22972200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr10:22970000-22972600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:22970000-22973000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:22970000-22973200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr10:22970000-22974200	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr10:22970000-22974600	Enhancers	Stomach Mucosa	stomach
40	chr10:22970000-22975200	Enhancers	HSMM	muscle
41	chr10:22970200-22971600	Weak transcription	Small Intestine	intestine
42	chr10:22970200-22972200	Enhancers	Colon Smooth Muscle	Colon
43	chr10:22970200-22972800	Flanking Active TSS	Primary T cells from cord blood	blood
44	chr10:22970200-22972800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr10:22970200-22973000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr10:22970200-22973000	Enhancers	NHDF-Ad	bronchial
47	chr10:22970200-22973200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr10:22970200-22973200	Enhancers	Osteobl	bone
49	chr10:22970200-22973400	Enhancers	Liver	Liver
50	chr10:22970200-22973800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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