Variant report

Variant	rs1778351
Chromosome Location	chr10:22905131-22905132
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22903368..22907136-chr10:22980812..22983747,3	K562	blood:
2	chr10:22904654..22906740-chr10:23342600..23344206,2	K562	blood:
3	chr10:22903935..22905994-chr10:23383207..23385236,2	K562	blood:
4	chr10:22891512..22893279-chr10:22903726..22905371,2	K562	blood:
5	chr10:22898428..22901008-chr10:22904659..22906365,2	MCF-7	breast:
6	chr10:22885033..22888742-chr10:22902706..22906221,3	K562	blood:
7	chr10:22904615..22907385-chr10:23344291..23346144,2	K562	blood:
8	chr10:22904654..22907385-chr10:23342706..23346144,3	K562	blood:
9	chr10:22903789..22905946-chr10:22980711..22982312,2	K562	blood:
10	chr10:22291298..22293395-chr10:22903797..22906323,2	K562	blood:
11	chr10:22291153..22292798-chr10:22904823..22906940,2	K562	blood:
12	chr10:22904770..22906402-chr10:22945960..22948214,2	K562	blood:
13	chr10:22903882..22905588-chr10:22909693..22911835,2	MCF-7	breast:
14	chr10:22901103..22903031-chr10:22903361..22905909,2	MCF-7	breast:
15	chr10:22887962..22890851-chr10:22904163..22906680,2	K562	blood:
16	chr10:22903231..22906218-chr10:22975267..22977260,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000148450	Chromatin interaction
ENSG00000150867	Chromatin interaction
ENSG00000136770	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1062190	0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10764338	0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11013054	0.88[JPT][hapmap]
rs11013104	0.84[CHB][hapmap]
rs11013110	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1171496	0.86[JPT][hapmap]
rs1171505	1.00[JPT][hapmap]
rs12254366	1.00[ASN][1000 genomes]
rs12261508	0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1326338	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326341	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1359642	0.83[ASN][1000 genomes]
rs1409397	0.88[JPT][hapmap]
rs16922479	0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1750750	0.88[JPT][hapmap]
rs1750752	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1750754	0.88[JPT][hapmap]
rs1750756	0.88[JPT][hapmap]
rs1750757	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1750758	0.88[JPT][hapmap]
rs1750759	0.90[EUR][1000 genomes]
rs1750760	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1750770	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1778302	0.89[EUR][1000 genomes]
rs1778303	0.88[JPT][hapmap]
rs1778304	0.86[JPT][hapmap]
rs1778331	0.88[JPT][hapmap]
rs1778352	0.91[EUR][1000 genomes]
rs1778353	0.88[JPT][hapmap]
rs1778355	0.88[JPT][hapmap];0.80[YRI][hapmap]
rs1778356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2559522	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2559523	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2559524	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2559526	0.88[JPT][hapmap]
rs2559527	0.88[JPT][hapmap]
rs2559528	0.84[JPT][hapmap]
rs2559529	0.82[EUR][1000 genomes]
rs2765994	0.88[JPT][hapmap]
rs2765995	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2765996	0.82[EUR][1000 genomes]
rs2798982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2913109	0.89[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2913110	0.88[JPT][hapmap]
rs6482229	0.88[JPT][hapmap]
rs7071450	0.88[JPT][hapmap]
rs7094187	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7095020	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7098460	0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7099314	0.88[JPT][hapmap]
rs754822	0.88[JPT][hapmap]
rs7912144	0.84[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7916957	0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22880000-22906800	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:22894000-22906600	Weak transcription	Ovary	ovary
3	chr10:22894800-22913000	Weak transcription	Fetal Kidney	kidney
4	chr10:22895600-22906000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:22897200-22907000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:22898200-22906400	Weak transcription	HSMMtube	muscle
7	chr10:22898200-22908000	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr10:22898400-22906800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:22899400-22909400	Enhancers	Brain Angular Gyrus	brain
10	chr10:22899800-22909600	Enhancers	Brain Hippocampus Middle	brain
11	chr10:22900400-22905400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:22901400-22909400	Weak transcription	Thymus	Thymus
13	chr10:22901600-22918200	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr10:22901800-22906600	Weak transcription	Aorta	Aorta
15	chr10:22901800-22908200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr10:22901800-22909400	Enhancers	Primary T cells from cord blood	blood
17	chr10:22901800-22913000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr10:22901800-22918800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr10:22902000-22908000	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr10:22902000-22908000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr10:22902400-22907800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:22902400-22921600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr10:22902600-22908200	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr10:22902800-22906400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr10:22902800-22912400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:22903000-22907400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr10:22903000-22909200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr10:22903200-22906200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr10:22903200-22908200	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr10:22903400-22905200	Enhancers	Primary hematopoietic stem cells	blood
31	chr10:22903400-22907600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:22903600-22905400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
33	chr10:22903800-22905600	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr10:22903800-22906600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr10:22903800-22922000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:22904000-22905400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr10:22904000-22905400	Enhancers	Left Ventricle	heart
38	chr10:22904000-22907000	Enhancers	Fetal Heart	heart
39	chr10:22904000-22910600	Enhancers	Primary T cells fromperipheralblood	blood
40	chr10:22904000-22913200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr10:22904200-22905400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr10:22904200-22905400	Enhancers	Lung	lung
43	chr10:22904200-22905400	Flanking Active TSS	GM12878-XiMat	blood
44	chr10:22904200-22905400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
45	chr10:22904200-22907400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr10:22904400-22905400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
47	chr10:22904400-22905400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr10:22904400-22905400	Flanking Active TSS	K562	blood
49	chr10:22904600-22905200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr10:22904600-22905200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood

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