Variant report

Variant	rs6482229
Chromosome Location	chr10:23006554-23006555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22998249..23002075-chr10:23006218..23008231,3	K562	blood:
2	chr10:23004207..23005718-chr10:23006215..23007803,2	K562	blood:
3	chr10:22997084..22999749-chr10:23005205..23007766,2	K562	blood:
4	chr10:23006228..23008699-chr10:23011054..23014038,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1062190	0.88[JPT][hapmap]
rs10764338	0.88[JPT][hapmap]
rs11013110	0.88[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1132816	0.95[ASN][1000 genomes]
rs11592427	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1171505	0.88[JPT][hapmap]
rs12259159	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12261508	0.88[JPT][hapmap]
rs1326341	0.88[JPT][hapmap]
rs16922479	0.88[JPT][hapmap]
rs1750757	0.88[JPT][hapmap]
rs1750770	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs1778351	0.88[JPT][hapmap]
rs1891878	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2068496	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2364738	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6482232	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6482233	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6482234	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6482235	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6482236	0.87[EUR][1000 genomes]
rs7068999	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7072589	0.94[EUR][1000 genomes]
rs7073783	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7082741	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7085322	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7091585	0.94[EUR][1000 genomes]
rs7091875	0.94[EUR][1000 genomes]
rs7092404	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7094187	0.88[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7095020	0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7095326	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7097599	0.90[EUR][1000 genomes]
rs7100792	0.90[EUR][1000 genomes]
rs71491932	0.83[EUR][1000 genomes]
rs7894778	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7897908	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7915600	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7916957	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23004200-23007400	Weak transcription	Liver	Liver
2	chr10:23004200-23011600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr10:23004400-23008400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:23004400-23009400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr10:23004400-23009400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:23004400-23009400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:23004400-23009600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr10:23004400-23009600	Weak transcription	Brain Angular Gyrus	brain
9	chr10:23004400-23010600	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr10:23004400-23011600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:23004400-23016400	Weak transcription	Brain Anterior Caudate	brain
12	chr10:23004400-23017800	Weak transcription	Spleen	Spleen
13	chr10:23004600-23009400	Weak transcription	Primary B cells from peripheral blood	blood
14	chr10:23004800-23009600	Weak transcription	GM12878-XiMat	blood
15	chr10:23006200-23007200	Weak transcription	K562	blood

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