Variant report

Variant	rs7072589
Chromosome Location	chr10:23032786-23032787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22944721..22947461-chr10:23031170..23034103,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11013110	0.90[EUR][1000 genomes]
rs11013113	0.81[EUR][1000 genomes]
rs11592427	0.93[EUR][1000 genomes]
rs12259159	0.88[EUR][1000 genomes]
rs1891878	0.96[EUR][1000 genomes]
rs2068496	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2364738	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35027263	0.83[EUR][1000 genomes]
rs6482229	0.94[EUR][1000 genomes]
rs6482232	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6482233	0.94[EUR][1000 genomes]
rs6482234	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6482235	0.93[EUR][1000 genomes]
rs6482236	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7068999	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7073783	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7082741	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7085322	0.99[EUR][1000 genomes]
rs7091585	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7091875	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7092404	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7094187	0.99[EUR][1000 genomes]
rs7095020	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7095326	0.99[EUR][1000 genomes]
rs7097599	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7100792	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71491932	0.86[EUR][1000 genomes]
rs7894778	0.99[EUR][1000 genomes]
rs7897908	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7915600	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7923171	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv550210	chr10:23012096-23064702	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv550211	chr10:23020350-23079385	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv550212	chr10:23030282-23086690	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23031000-23033400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:23031200-23032800	Enhancers	Primary B cells from cord blood	blood
3	chr10:23031200-23033200	Enhancers	Primary B cells from peripheral blood	blood
4	chr10:23031200-23033200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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