Variant report

Variant	rs6482236
Chromosome Location	chr10:23026289-23026290
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11013110	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs11013113	0.90[EUR][1000 genomes]
rs11592427	0.96[EUR][1000 genomes]
rs12259159	0.82[EUR][1000 genomes]
rs17527491	0.96[ASN][1000 genomes]
rs1891878	0.94[EUR][1000 genomes]
rs2068496	0.91[EUR][1000 genomes]
rs2364738	0.88[EUR][1000 genomes]
rs35027263	0.82[EUR][1000 genomes]
rs6482229	0.87[EUR][1000 genomes]
rs6482232	0.88[EUR][1000 genomes]
rs6482233	0.96[EUR][1000 genomes]
rs6482234	0.94[EUR][1000 genomes]
rs6482235	0.96[EUR][1000 genomes]
rs7068999	0.91[EUR][1000 genomes]
rs7072589	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7073783	0.96[EUR][1000 genomes]
rs7082741	0.96[EUR][1000 genomes]
rs7085322	0.91[EUR][1000 genomes]
rs7091585	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7091875	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7092404	0.95[EUR][1000 genomes]
rs7094187	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs7095020	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs7095326	0.91[EUR][1000 genomes]
rs7097599	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7100792	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71491932	0.85[EUR][1000 genomes]
rs7894778	0.91[EUR][1000 genomes]
rs7897908	0.92[EUR][1000 genomes]
rs7915600	0.96[EUR][1000 genomes]
rs7923171	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv550210	chr10:23012096-23064702	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv550211	chr10:23020350-23079385	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23016400-23027600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:23020000-23029800	Weak transcription	Stomach Mucosa	stomach
3	chr10:23024600-23026400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:23024600-23027000	Enhancers	K562	blood
5	chr10:23025400-23026600	Weak transcription	NHDF-Ad	bronchial
6	chr10:23025600-23026600	Weak transcription	HUVEC	blood vessel
7	chr10:23025800-23026600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:23026200-23028200	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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