Variant report

Variant	rs11592427
Chromosome Location	chr10:23015729-23015730
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:23003493..23005808-chr10:23014761..23017222,2	MCF-7	breast:
2	chr10:23015053..23017126-chr10:23022696..23025104,2	MCF-7	breast:
3	chr10:23014598..23016365-chr10:23019653..23022054,2	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1062190	1.00[JPT][hapmap]
rs10764338	1.00[JPT][hapmap]
rs11013054	0.88[JPT][hapmap]
rs11013104	0.85[CHB][hapmap]
rs11013110	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11013113	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1132816	0.95[ASN][1000 genomes]
rs1171496	0.86[JPT][hapmap]
rs1171505	1.00[JPT][hapmap]
rs12259159	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12261508	1.00[JPT][hapmap]
rs1326341	1.00[JPT][hapmap]
rs16922479	1.00[JPT][hapmap]
rs1750756	0.88[JPT][hapmap]
rs1750757	1.00[JPT][hapmap]
rs1750758	0.88[JPT][hapmap]
rs1750770	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1778303	0.88[JPT][hapmap]
rs1778304	0.86[JPT][hapmap]
rs1778351	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1778356	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs1891878	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2068496	0.93[EUR][1000 genomes]
rs2364738	0.91[EUR][1000 genomes]
rs2559522	0.88[JPT][hapmap]
rs2559523	0.88[JPT][hapmap]
rs2559524	0.86[JPT][hapmap]
rs2765995	0.88[JPT][hapmap]
rs2798982	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs2913109	0.88[JPT][hapmap]
rs35027263	0.80[EUR][1000 genomes]
rs6482229	0.88[JPT][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6482232	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6482233	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482234	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482235	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482236	0.96[EUR][1000 genomes]
rs7068999	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071450	0.88[JPT][hapmap]
rs7072589	0.93[EUR][1000 genomes]
rs7073783	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7082741	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7085322	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091585	0.93[EUR][1000 genomes]
rs7091875	0.93[EUR][1000 genomes]
rs7092404	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7094187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095326	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7097599	0.98[EUR][1000 genomes]
rs7098460	0.88[JPT][hapmap]
rs7100792	0.98[EUR][1000 genomes]
rs71491932	0.84[EUR][1000 genomes]
rs7894778	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897908	0.94[EUR][1000 genomes]
rs7912144	0.88[JPT][hapmap]
rs7915600	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7916957	1.00[JPT][hapmap]
rs7923171	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv550210	chr10:23012096-23064702	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3520789	chr10:23014898-23019504	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3480396	chr10:23015429-23016862	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3496567	chr10:23015459-23016864	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3496570	chr10:23015466-23016836	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3496568	chr10:23015479-23016791	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3480174	chr10:23015484-23016830	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3480285	chr10:23015486-23016823	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3480618	chr10:23015493-23016782	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3496566	chr10:23015503-23016804	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3496569	chr10:23015509-23016803	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3480507	chr10:23015548-23016759	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3496565	chr10:23015558-23016759	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3480729	chr10:23015562-23016757	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3496571	chr10:23015562-23016757	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3520790	chr10:23015562-23016757	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv15894	chr10:23015569-23016682	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23004400-23016400	Weak transcription	Brain Anterior Caudate	brain
2	chr10:23004400-23017800	Weak transcription	Spleen	Spleen
3	chr10:23009800-23016600	Weak transcription	Brain Angular Gyrus	brain
4	chr10:23012600-23015800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:23014000-23015800	Weak transcription	Primary B cells from peripheral blood	blood
6	chr10:23014000-23016000	Weak transcription	GM12878-XiMat	blood
7	chr10:23014000-23016600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr10:23014000-23017200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr10:23014600-23016400	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links