Variant report

Variant	rs12259159
Chromosome Location	chr10:22994781-22994782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22993991..22996463-chr10:23255270..23257996,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11013110	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1132816	0.95[ASN][1000 genomes]
rs11592427	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1891878	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2068496	0.88[EUR][1000 genomes]
rs55645135	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6482229	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6482232	0.85[ASN][1000 genomes]
rs6482233	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6482234	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6482235	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6482236	0.82[EUR][1000 genomes]
rs7068999	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7072589	0.88[EUR][1000 genomes]
rs7073783	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7082741	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7085322	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7091585	0.88[EUR][1000 genomes]
rs7091875	0.88[EUR][1000 genomes]
rs7092404	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7094187	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7095020	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7095326	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7097599	0.84[EUR][1000 genomes]
rs7100792	0.84[EUR][1000 genomes]
rs7894778	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7897908	0.89[EUR][1000 genomes]
rs7915600	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22972600-23000200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr10:22972800-22999400	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr10:22973000-22997600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:22973000-22999200	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr10:22975600-23001200	Weak transcription	Colonic Mucosa	Colon
6	chr10:22977200-22998400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:22977600-22999200	Weak transcription	Dnd41	blood
8	chr10:22980400-22999000	Weak transcription	Lung	lung
9	chr10:22980400-23000800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:22983000-22999000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr10:22983000-22999200	Weak transcription	HSMM	muscle
12	chr10:22983200-22999200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:22983200-23000400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr10:22983200-23001200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:22983200-23001400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:22983400-23000000	Weak transcription	NHLF	lung
17	chr10:22987200-22999200	Weak transcription	Psoas Muscle	Psoas
18	chr10:22987200-23001600	Weak transcription	Fetal Muscle Trunk	muscle
19	chr10:22987200-23001600	Weak transcription	Ovary	ovary
20	chr10:22987800-23000400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr10:22988600-23001600	Weak transcription	Fetal Intestine Small	intestine
22	chr10:22988800-22995600	Enhancers	Primary B cells from peripheral blood	blood
23	chr10:22989200-22996600	Weak transcription	Right Ventricle	heart
24	chr10:22989200-22998200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr10:22989200-22999000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:22989200-23000000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr10:22989600-22996600	Weak transcription	Aorta	Aorta
28	chr10:22989600-22996600	Weak transcription	Left Ventricle	heart
29	chr10:22989600-22999200	Weak transcription	Esophagus	oesophagus
30	chr10:22989600-23001800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:22989600-23001800	Weak transcription	Pancreas	Pancrea
32	chr10:22990000-22996800	Enhancers	Brain Substantia Nigra	brain
33	chr10:22990600-22999200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr10:22990600-22999400	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr10:22990600-23000400	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr10:22990600-23001800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr10:22990800-22995000	Weak transcription	HepG2	liver
38	chr10:22990800-22999000	Weak transcription	Thymus	Thymus
39	chr10:22990800-22999200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr10:22990800-22999200	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr10:22990800-23000000	Enhancers	Primary T killer memory cells from peripheral blood	blood
42	chr10:22990800-23001000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr10:22990800-23001000	Weak transcription	HUVEC	blood vessel
44	chr10:22990800-23001400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr10:22990800-23001600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr10:22990800-23001600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr10:22991200-22996600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr10:22991200-22999200	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr10:22991200-22999400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr10:22991200-23000000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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