Variant report

Variant	rs7897908
Chromosome Location	chr10:23026468-23026469
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11013110	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11013113	0.82[EUR][1000 genomes]
rs11592427	0.94[EUR][1000 genomes]
rs12259159	0.89[EUR][1000 genomes]
rs1891878	0.96[EUR][1000 genomes]
rs2068496	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2364738	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35027263	0.83[EUR][1000 genomes]
rs6482229	0.95[YRI][hapmap];0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6482232	0.86[EUR][1000 genomes]
rs6482233	0.95[EUR][1000 genomes]
rs6482234	0.92[EUR][1000 genomes]
rs6482235	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6482236	0.92[EUR][1000 genomes]
rs7068999	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7072589	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7073783	0.95[EUR][1000 genomes]
rs7082741	0.95[EUR][1000 genomes]
rs7085322	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7091585	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7091875	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7092404	0.93[EUR][1000 genomes]
rs7094187	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7095020	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs7095326	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7097599	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7100792	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71491932	0.87[EUR][1000 genomes]
rs7894778	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7915600	0.95[EUR][1000 genomes]
rs7923171	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv550210	chr10:23012096-23064702	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv550211	chr10:23020350-23079385	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7897908	PIP4K2A	cis	Lymphoblastoid	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23016400-23027600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:23020000-23029800	Weak transcription	Stomach Mucosa	stomach
3	chr10:23024600-23027000	Enhancers	K562	blood
4	chr10:23025400-23026600	Weak transcription	NHDF-Ad	bronchial
5	chr10:23025600-23026600	Weak transcription	HUVEC	blood vessel
6	chr10:23025800-23026600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:23026200-23028200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr10:23026400-23026600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:23026400-23026600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:23026400-23027200	Enhancers	Muscle Satellite Cultured Cells	--

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