Variant report

Variant	rs1778304
Chromosome Location	chr10:22911717-22911718
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22911051..22913869-chr10:23344433..23348720,3	K562	blood:
2	chr10:22910882..22913408-chr10:23001985..23003913,2	K562	blood:
3	chr10:22903882..22905588-chr10:22909693..22911835,2	MCF-7	breast:
4	chr10:22910882..22912555-chr10:23002413..23005223,2	K562	blood:
5	chr10:22911464..22914418-chr10:23001994..23003739,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1062190	0.86[JPT][hapmap]
rs10764338	0.86[JPT][hapmap]
rs11013054	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11013110	0.86[JPT][hapmap]
rs1171496	0.80[EUR][1000 genomes]
rs1171505	0.81[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs12261508	0.86[JPT][hapmap]
rs1326341	0.86[JPT][hapmap]
rs1409397	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1409398	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16922479	0.86[JPT][hapmap]
rs1750750	0.92[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1750754	0.96[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1750755	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1750756	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1750757	0.96[CEU][hapmap];0.86[JPT][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1750758	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1750770	0.86[JPT][hapmap]
rs1778303	0.93[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1778316	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1778331	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1778351	0.86[JPT][hapmap]
rs1778353	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1778355	0.96[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2256542	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2364116	0.88[ASN][1000 genomes]
rs2559526	0.96[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2559527	0.89[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2559528	0.89[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2765994	0.96[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2765997	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs2765998	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2766001	0.80[ASN][1000 genomes]
rs2913110	0.96[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7071450	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7094187	0.86[JPT][hapmap]
rs7095020	0.86[JPT][hapmap]
rs7099314	0.92[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs754822	0.96[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7916957	0.86[JPT][hapmap]
rs943194	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs943195	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22894800-22913000	Weak transcription	Fetal Kidney	kidney
2	chr10:22901600-22918200	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr10:22901800-22913000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr10:22901800-22918800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr10:22902400-22921600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:22902800-22912400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:22903800-22922000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:22904000-22913200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr10:22905000-22912400	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr10:22905000-22914400	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr10:22905000-22918600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr10:22905200-22912800	Weak transcription	Colonic Mucosa	Colon
13	chr10:22905200-22919400	Enhancers	NHDF-Ad	bronchial
14	chr10:22905400-22912200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr10:22905400-22913800	Enhancers	Brain Anterior Caudate	brain
16	chr10:22905400-22914400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:22905400-22915400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr10:22906400-22918200	Enhancers	NHLF	lung
19	chr10:22906600-22912800	Enhancers	Placenta	Placenta
20	chr10:22906600-22913600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:22906800-22912600	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr10:22907000-22912400	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr10:22907600-22913000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr10:22907600-22922400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr10:22907800-22911800	Weak transcription	Colon Smooth Muscle	Colon
26	chr10:22907800-22912000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:22907800-22912200	Weak transcription	Primary hematopoietic stem cells	blood
28	chr10:22907800-22912600	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr10:22907800-22912600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:22907800-22914400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr10:22907800-22919000	Weak transcription	Duodenum Mucosa	Duodenum
32	chr10:22908000-22912400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr10:22908000-22912400	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr10:22908000-22913200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr10:22908000-22914400	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr10:22908200-22912400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr10:22908200-22918000	Weak transcription	Primary B cells from cord blood	blood
38	chr10:22908600-22914600	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr10:22908800-22916200	Weak transcription	Liver	Liver
40	chr10:22908800-22918200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr10:22909000-22913600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr10:22909400-22913600	Enhancers	Fetal Thymus	thymus
43	chr10:22909600-22912800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr10:22909600-22913400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr10:22909800-22912200	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr10:22909800-22912400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr10:22909800-22912400	Weak transcription	Pancreas	Pancrea
48	chr10:22909800-22917000	Enhancers	HUVEC	blood vessel
49	chr10:22909800-22917600	Weak transcription	Thymus	Thymus
50	chr10:22909800-22930400	Weak transcription	Fetal Stomach	stomach

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