Variant report

Variant	rs2256542
Chromosome Location	chr10:22895014-22895015
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22892740..22895922-chr10:23342638..23345686,4	K562	blood:
2	chr10:22894422..22896822-chr10:23343724..23345259,2	K562	blood:
3	chr10:22894884..22897373-chr10:22931733..22933332,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11013054	0.86[ASN][1000 genomes]
rs1171505	0.81[EUR][1000 genomes]
rs1409397	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1409398	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1750750	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1750754	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1750755	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1750756	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1750757	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1750758	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1778303	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1778304	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1778316	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1778331	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1778353	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1778355	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2364116	0.84[ASN][1000 genomes]
rs2559523	0.88[AFR][1000 genomes]
rs2559526	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2559527	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2559528	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2765994	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2765997	0.89[EUR][1000 genomes]
rs2765998	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2913110	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7071450	0.85[ASN][1000 genomes]
rs7099314	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs754822	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs943194	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs943195	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22844200-22904800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:22856600-22899200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:22858200-22904000	Weak transcription	Colonic Mucosa	Colon
4	chr10:22862400-22902000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:22870400-22895200	Weak transcription	HepG2	liver
6	chr10:22877200-22896400	Weak transcription	Fetal Intestine Large	intestine
7	chr10:22880000-22906800	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:22880200-22895200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr10:22880200-22896200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:22880200-22897000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr10:22880400-22896600	Weak transcription	Liver	Liver
12	chr10:22883200-22896200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr10:22883200-22899200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:22885200-22896200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr10:22886600-22896800	Weak transcription	HSMMtube	muscle
16	chr10:22887200-22902400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr10:22888800-22895200	Weak transcription	A549	lung
18	chr10:22888800-22898000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr10:22888800-22905000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr10:22889000-22895400	Weak transcription	K562	blood
21	chr10:22889000-22896800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:22889400-22904400	Weak transcription	Hela-S3	cervix
23	chr10:22889800-22896000	Weak transcription	Aorta	Aorta
24	chr10:22890800-22896200	Weak transcription	Stomach Smooth Muscle	stomach
25	chr10:22891000-22895200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr10:22891000-22896200	Weak transcription	Fetal Heart	heart
27	chr10:22891000-22896800	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr10:22891000-22897000	Weak transcription	Fetal Intestine Small	intestine
29	chr10:22891000-22901400	Weak transcription	Gastric	stomach
30	chr10:22891000-22904800	Weak transcription	Right Ventricle	heart
31	chr10:22891200-22904800	Weak transcription	NHLF	lung
32	chr10:22891600-22897600	Weak transcription	Left Ventricle	heart
33	chr10:22891800-22895200	Enhancers	Brain Hippocampus Middle	brain
34	chr10:22892200-22895200	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr10:22892200-22895400	Enhancers	Primary B cells from peripheral blood	blood
36	chr10:22892200-22895400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr10:22892400-22895200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr10:22892400-22896200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr10:22892600-22896400	Enhancers	Brain Cingulate Gyrus	brain
40	chr10:22892800-22895400	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr10:22893200-22896600	Genic enhancers	Primary T cells from cord blood	blood
42	chr10:22893200-22897000	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr10:22893400-22895800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr10:22893600-22895200	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr10:22893600-22895400	Enhancers	Primary hematopoietic stem cells	blood
46	chr10:22893600-22895400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr10:22893600-22897800	Weak transcription	Fetal Lung	lung
48	chr10:22893600-22902000	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr10:22893800-22895200	Enhancers	Primary neutrophils fromperipheralblood	blood
50	chr10:22893800-22895200	Weak transcription	Duodenum Mucosa	Duodenum

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