Variant report

Variant	rs17527491
Chromosome Location	chr10:23027581-23027582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11013110	0.80[CEU][hapmap]
rs1132816	0.90[EUR][1000 genomes]
rs11596218	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12778869	0.89[EUR][1000 genomes]
rs34032638	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs34303686	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6482236	0.96[ASN][1000 genomes]
rs7094187	0.80[CEU][hapmap]
rs7095020	0.80[CEU][hapmap]
rs71491932	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv550210	chr10:23012096-23064702	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv550211	chr10:23020350-23079385	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23016400-23027600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:23020000-23029800	Weak transcription	Stomach Mucosa	stomach
3	chr10:23026200-23028200	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr10:23026600-23028200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:23026600-23028200	Enhancers	Hela-S3	cervix
6	chr10:23026600-23028200	Enhancers	HUVEC	blood vessel
7	chr10:23026600-23028200	Enhancers	NHDF-Ad	bronchial
8	chr10:23026600-23028600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:23026800-23027600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:23027000-23028400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:23027200-23027600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr10:23027200-23027600	Weak transcription	NH-A	brain
13	chr10:23027400-23028000	Enhancers	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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