Variant report

Variant	rs34303686
Chromosome Location	chr10:22999296-22999297
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22997562..22999322-chr10:23342370..23344992,2	K562	blood:
2	chr10:22969827..22972889-chr10:22996962..23000466,4	K562	blood:
3	chr10:22997084..22999749-chr10:23005205..23007766,2	K562	blood:
4	chr10:22998249..23002075-chr10:23006218..23008231,3	K562	blood:
5	chr10:22974896..22977203-chr10:22998559..23001394,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11013098	0.83[ASN][1000 genomes]
rs11013113	0.95[ASN][1000 genomes]
rs1132816	0.93[EUR][1000 genomes]
rs11592199	0.83[ASN][1000 genomes]
rs11596218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12255136	0.89[ASN][1000 genomes]
rs12257665	0.83[ASN][1000 genomes]
rs12266181	0.83[ASN][1000 genomes]
rs12778869	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17527491	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs34032638	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34729599	0.83[ASN][1000 genomes]
rs35027263	0.95[ASN][1000 genomes]
rs58647212	0.89[ASN][1000 genomes]
rs71491932	0.95[ASN][1000 genomes]
rs7923171	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22972600-23000200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr10:22972800-22999400	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr10:22975600-23001200	Weak transcription	Colonic Mucosa	Colon
4	chr10:22980400-23000800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:22983200-23000400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr10:22983200-23001200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:22983200-23001400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:22983400-23000000	Weak transcription	NHLF	lung
9	chr10:22987200-23001600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr10:22987200-23001600	Weak transcription	Ovary	ovary
11	chr10:22987800-23000400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr10:22988600-23001600	Weak transcription	Fetal Intestine Small	intestine
13	chr10:22989200-23000000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr10:22989600-23001800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:22989600-23001800	Weak transcription	Pancreas	Pancrea
16	chr10:22990600-22999400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr10:22990600-23000400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr10:22990600-23001800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:22990800-23000000	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr10:22990800-23001000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:22990800-23001000	Weak transcription	HUVEC	blood vessel
22	chr10:22990800-23001400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr10:22990800-23001600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr10:22990800-23001600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:22991200-22999400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr10:22991200-23000000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr10:22991200-23001600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr10:22991400-22999400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr10:22991800-23000000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr10:22992000-22999400	Weak transcription	Fetal Lung	lung
31	chr10:22992000-23000400	Weak transcription	Fetal Stomach	stomach
32	chr10:22992200-23000200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr10:22992200-23001800	Weak transcription	Gastric	stomach
34	chr10:22994800-23000600	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr10:22996200-23000000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr10:22996800-23000000	Enhancers	Primary T cells from cord blood	blood
37	chr10:22997200-23001200	Enhancers	Primary B cells from peripheral blood	blood
38	chr10:22997400-23003800	Active TSS	Brain Inferior Temporal Lobe	brain
39	chr10:22997800-23000000	Enhancers	Primary T cells fromperipheralblood	blood
40	chr10:22997800-23000800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr10:22997800-23001600	Weak transcription	Right Ventricle	heart
42	chr10:22998000-23001800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr10:22998600-23000000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
44	chr10:22998600-23000800	Enhancers	Primary hematopoietic stem cells	blood
45	chr10:22998600-23003800	Active TSS	Brain Hippocampus Middle	brain
46	chr10:22998800-22999600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr10:22998800-23000800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
48	chr10:22999000-22999600	Enhancers	Fetal Thymus	thymus
49	chr10:22999000-22999600	Enhancers	Lung	lung
50	chr10:22999000-22999600	Enhancers	Spleen	Spleen

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