Variant report

Variant	rs58647212
Chromosome Location	chr10:22990197-22990198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22989774..22994119-chr10:23044705..23049476,4	K562	blood:
2	chr10:22988026..22991069-chr10:22992332..22994578,3	K562	blood:
3	chr10:22975338..22977711-chr10:22988402..22990990,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11013098	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11013105	0.90[AFR][1000 genomes]
rs11013113	0.84[ASN][1000 genomes]
rs11592199	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11596218	0.89[ASN][1000 genomes]
rs11597784	0.89[EUR][1000 genomes]
rs12249907	0.92[EUR][1000 genomes]
rs12255136	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12257665	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12266181	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12778869	0.89[ASN][1000 genomes]
rs34303686	0.89[ASN][1000 genomes]
rs34729599	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35027263	0.84[ASN][1000 genomes]
rs6482228	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7079078	0.91[EUR][1000 genomes]
rs7084115	0.86[EUR][1000 genomes]
rs7100360	0.89[EUR][1000 genomes]
rs71491932	0.84[ASN][1000 genomes]
rs7923171	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22972600-23000200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr10:22972800-22999400	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr10:22973000-22997600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:22973000-22999200	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr10:22975600-23001200	Weak transcription	Colonic Mucosa	Colon
6	chr10:22977200-22998400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:22977600-22999200	Weak transcription	Dnd41	blood
8	chr10:22980200-22993600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:22980400-22999000	Weak transcription	Lung	lung
10	chr10:22980400-23000800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:22983000-22999000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr10:22983000-22999200	Weak transcription	HSMM	muscle
13	chr10:22983200-22990400	Weak transcription	Primary B cells from cord blood	blood
14	chr10:22983200-22992400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr10:22983200-22999200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:22983200-23000400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr10:22983200-23001200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:22983200-23001400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr10:22983400-22992800	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr10:22983400-23000000	Weak transcription	NHLF	lung
21	chr10:22983600-22994400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:22984600-22990200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:22985000-22991400	Enhancers	Brain Cingulate Gyrus	brain
24	chr10:22986200-22991400	Enhancers	Brain Angular Gyrus	brain
25	chr10:22986200-22992000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:22986800-22993600	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr10:22987200-22990200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr10:22987200-22999200	Weak transcription	Psoas Muscle	Psoas
29	chr10:22987200-23001600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr10:22987200-23001600	Weak transcription	Ovary	ovary
31	chr10:22987400-22993200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr10:22987800-23000400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr10:22988000-22991200	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr10:22988000-22991400	Enhancers	Primary T cells fromperipheralblood	blood
35	chr10:22988000-22991800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr10:22988200-22990600	Enhancers	H1 Cell Line	embryonic stem cell
37	chr10:22988200-22990800	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr10:22988200-22990800	Enhancers	Spleen	Spleen
39	chr10:22988200-22991200	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr10:22988200-22992000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr10:22988200-22992400	Enhancers	Fetal Thymus	thymus
42	chr10:22988400-22990200	Weak transcription	Colon Smooth Muscle	Colon
43	chr10:22988400-22990400	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr10:22988400-22991400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr10:22988600-22991400	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr10:22988600-23001600	Weak transcription	Fetal Intestine Small	intestine
47	chr10:22988800-22990600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr10:22988800-22990600	Enhancers	Right Atrium	heart
49	chr10:22988800-22990800	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr10:22988800-22991800	Enhancers	Duodenum Mucosa	Duodenum

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