Variant report

Variant	rs34729599
Chromosome Location	chr10:22975978-22975979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22973856..22976204-chr10:22979187..22981448,2	MCF-7	breast:
2	chr10:22975338..22977711-chr10:22988402..22990990,2	K562	blood:
3	chr10:22970833..22976396-chr10:22998694..23005048,8	K562	blood:
4	chr10:22903231..22906218-chr10:22975267..22977260,2	K562	blood:
5	chr10:22973997..22977773-chr10:23342943..23345653,3	K562	blood:
6	chr10:22974896..22977203-chr10:22998559..23001394,2	K562	blood:
7	chr10:22964954..22967135-chr10:22975268..22977961,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11013098	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013113	0.89[ASN][1000 genomes]
rs11592199	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11596218	0.83[ASN][1000 genomes]
rs11597784	0.91[EUR][1000 genomes]
rs12249907	0.90[EUR][1000 genomes]
rs12255136	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12257665	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12266181	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12778869	0.83[ASN][1000 genomes]
rs34032638	0.80[ASN][1000 genomes]
rs34303686	0.83[ASN][1000 genomes]
rs35027263	0.89[ASN][1000 genomes]
rs35360085	0.80[EUR][1000 genomes]
rs58647212	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6482228	0.91[EUR][1000 genomes]
rs7079078	0.89[EUR][1000 genomes]
rs7084115	0.84[EUR][1000 genomes]
rs7100360	0.92[EUR][1000 genomes]
rs71491932	0.89[ASN][1000 genomes]
rs7923171	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22959200-22980000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:22961800-22979600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:22968400-22976000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr10:22969400-22976600	Enhancers	Brain Cingulate Gyrus	brain
5	chr10:22969800-22976000	Enhancers	Brain Anterior Caudate	brain
6	chr10:22970400-22977800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:22970600-22989000	Weak transcription	Esophagus	oesophagus
8	chr10:22971400-22976000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:22972000-22977200	Enhancers	Brain Hippocampus Middle	brain
10	chr10:22972400-22977400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:22972600-22978400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr10:22972600-22978400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr10:22972600-22979000	Enhancers	Primary T cells fromperipheralblood	blood
14	chr10:22972600-22983600	Enhancers	Brain Substantia Nigra	brain
15	chr10:22972600-23000200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr10:22972800-22977800	Enhancers	Primary T cells from cord blood	blood
17	chr10:22972800-22978200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:22972800-22990000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr10:22972800-22999400	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr10:22973000-22976200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:22973000-22976400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr10:22973000-22978200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr10:22973000-22978400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr10:22973000-22988200	Weak transcription	Aorta	Aorta
25	chr10:22973000-22990000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr10:22973000-22997600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr10:22973000-22999200	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr10:22973200-22976000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr10:22973200-22976400	Enhancers	HepG2	liver
30	chr10:22973200-22979600	Weak transcription	Osteobl	bone
31	chr10:22973200-22981600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr10:22973200-22987400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr10:22973200-22989400	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr10:22973600-22978200	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr10:22973800-22978200	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr10:22973800-22978600	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr10:22973800-22979400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr10:22973800-22979600	Weak transcription	HMEC	breast
39	chr10:22973800-22979800	Weak transcription	Pancreas	Pancrea
40	chr10:22973800-22985800	Weak transcription	Fetal Heart	heart
41	chr10:22974000-22976200	Weak transcription	Brain Angular Gyrus	brain
42	chr10:22974000-22976400	Enhancers	K562	blood
43	chr10:22974000-22977600	Enhancers	Dnd41	blood
44	chr10:22974000-22979400	Weak transcription	Liver	Liver
45	chr10:22974000-22979400	Weak transcription	Fetal Lung	lung
46	chr10:22974000-22979600	Weak transcription	NHLF	lung
47	chr10:22974000-22979800	Weak transcription	Primary B cells from cord blood	blood
48	chr10:22974000-22985400	Weak transcription	Colon Smooth Muscle	Colon
49	chr10:22974400-22976000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr10:22974400-22976000	Enhancers	Left Ventricle	heart

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