Variant report

Variant	rs34032638
Chromosome Location	chr10:23011871-23011872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:23000525..23003741-chr10:23009188..23012345,5	MCF-7	breast:
2	chr10:23006228..23008699-chr10:23011054..23014038,2	K562	blood:
3	chr10:23010619..23013032-chr10:23343803..23345736,2	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11013098	0.80[ASN][1000 genomes]
rs11013113	0.90[ASN][1000 genomes]
rs1132816	0.92[EUR][1000 genomes]
rs11592199	0.80[ASN][1000 genomes]
rs11596218	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12778869	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17527491	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs34303686	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34729599	0.80[ASN][1000 genomes]
rs35027263	0.90[ASN][1000 genomes]
rs71491932	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7923171	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23004400-23016400	Weak transcription	Brain Anterior Caudate	brain
2	chr10:23004400-23017800	Weak transcription	Spleen	Spleen
3	chr10:23009800-23016600	Weak transcription	Brain Angular Gyrus	brain
4	chr10:23010600-23014000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr10:23011200-23012400	Enhancers	HepG2	liver
6	chr10:23011400-23012000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:23011400-23012000	Enhancers	Stomach Mucosa	stomach
8	chr10:23011400-23012400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr10:23011400-23013200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr10:23011400-23014000	Enhancers	Primary B cells from peripheral blood	blood
11	chr10:23011600-23012000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr10:23011600-23012000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr10:23011600-23012000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr10:23011600-23012000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:23011600-23012400	Enhancers	H9 Cell Line	embryonic stem cell
16	chr10:23011600-23012600	Enhancers	Duodenum Mucosa	Duodenum
17	chr10:23011600-23012600	Enhancers	Fetal Thymus	thymus
18	chr10:23011600-23012600	Flanking Active TSS	GM12878-XiMat	blood
19	chr10:23011600-23013200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:23011600-23013600	Enhancers	Primary hematopoietic stem cells	blood
21	chr10:23011800-23012200	Enhancers	Primary B cells from cord blood	blood
22	chr10:23011800-23012400	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr10:23011800-23012600	Enhancers	Primary T cells from cord blood	blood
24	chr10:23011800-23012600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr10:23011800-23012600	Enhancers	Fetal Kidney	kidney
26	chr10:23011800-23013000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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