Variant report

Variant	rs12250558
Chromosome Location	chr10:61609496-61609497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61609459..61612041-chr10:61664772..61666784,3	K562	blood:
2	chr10:61608407..61613876-chr10:61664743..61669286,7	K562	blood:
3	chr10:61604056..61606311-chr10:61608838..61611631,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

rs_ID	r²[population]
rs10400018	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs10994058	0.85[LWK][hapmap]
rs10994165	1.00[CEU][hapmap]
rs12244539	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12247565	0.83[AFR][1000 genomes]
rs12259133	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12413122	1.00[CEU][hapmap]
rs6479674	1.00[CEU][hapmap]
rs7090532	1.00[GIH][hapmap];0.85[MKK][hapmap]

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61571400-61628000	Weak transcription	Spleen	Spleen
2	chr10:61571600-61616000	Weak transcription	Fetal Kidney	kidney
3	chr10:61572000-61615000	Weak transcription	Colonic Mucosa	Colon
4	chr10:61572400-61618800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:61578000-61623200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:61580200-61624200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr10:61580400-61624200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr10:61580600-61616200	Weak transcription	Fetal Brain Male	brain
9	chr10:61583200-61640600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:61586000-61612200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:61587000-61612000	Weak transcription	Ovary	ovary
12	chr10:61589400-61616200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:61591800-61624000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr10:61592600-61616600	Weak transcription	NH-A	brain
15	chr10:61593200-61629400	Weak transcription	Lung	lung
16	chr10:61594000-61614000	Weak transcription	Small Intestine	intestine
17	chr10:61595200-61614000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr10:61595800-61624000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr10:61596000-61612000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr10:61598200-61611800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr10:61598800-61611800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr10:61598800-61614400	Weak transcription	Fetal Brain Female	brain
23	chr10:61599000-61613800	Weak transcription	Aorta	Aorta
24	chr10:61599000-61613800	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr10:61599400-61611600	Weak transcription	HMEC	breast
26	chr10:61600000-61616400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr10:61602800-61610400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr10:61602800-61610800	Strong transcription	Primary B cells from cord blood	blood
29	chr10:61603000-61612400	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr10:61603800-61612400	Weak transcription	Brain Hippocampus Middle	brain
31	chr10:61603800-61612600	Weak transcription	Brain Substantia Nigra	brain
32	chr10:61603800-61614200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr10:61603800-61618400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr10:61604200-61611800	Weak transcription	Brain Angular Gyrus	brain
35	chr10:61605000-61610600	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr10:61605200-61609800	Strong transcription	Fetal Intestine Large	intestine
37	chr10:61605200-61610800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr10:61605200-61612200	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr10:61605200-61612400	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr10:61605400-61610200	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr10:61605400-61610400	Strong transcription	Fetal Muscle Trunk	muscle
42	chr10:61605400-61610400	Strong transcription	HepG2	liver
43	chr10:61605400-61610600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr10:61605400-61612000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr10:61605400-61618400	Weak transcription	Fetal Heart	heart
46	chr10:61605600-61609600	Strong transcription	Liver	Liver
47	chr10:61605600-61610000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr10:61605600-61610400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr10:61605600-61611400	Strong transcription	Duodenum Mucosa	Duodenum
50	chr10:61605800-61609600	Strong transcription	HSMM	muscle

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