Variant report

Variant	rs10994058
Chromosome Location	chr10:61618789-61618790
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61618604..61622220-chr10:61664749..61668725,4	MCF-7	breast:
2	chr10:61618470..61621431-chr10:61631382..61633046,2	K562	blood:

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10509114	0.89[CHD][hapmap]
rs10761418	0.89[ASN][1000 genomes]
rs12250558	0.85[LWK][hapmap]
rs1445388	0.84[ASN][1000 genomes]
rs17202345	0.89[CHD][hapmap]
rs17202600	0.81[CEU][hapmap]
rs17790901	0.89[CHD][hapmap]
rs1822913	0.91[CHB][hapmap];0.82[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.84[TSI][hapmap];0.89[ASN][1000 genomes]
rs2271564	0.89[CHD][hapmap]
rs2393573	0.91[CHB][hapmap]
rs3763745	0.82[MEX][hapmap]
rs4948367	0.89[CHD][hapmap]
rs4948368	0.88[CHD][hapmap];0.84[GIH][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap]
rs61848693	0.89[ASN][1000 genomes]
rs7090532	0.80[LWK][hapmap]
rs7475730	0.84[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10994058	SLC16A9	cis	cerebellum	SCAN

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61571400-61628000	Weak transcription	Spleen	Spleen
2	chr10:61572400-61618800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:61578000-61623200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:61580200-61624200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr10:61580400-61624200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr10:61583200-61640600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:61591800-61624000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr10:61593200-61629400	Weak transcription	Lung	lung
9	chr10:61595800-61624000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr10:61608000-61624000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr10:61608000-61624200	Weak transcription	Right Ventricle	heart
12	chr10:61608000-61637200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:61610000-61619600	Weak transcription	Fetal Muscle Leg	muscle
14	chr10:61610000-61624200	Weak transcription	Fetal Thymus	thymus
15	chr10:61610200-61624000	Weak transcription	Hela-S3	cervix
16	chr10:61610200-61624400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr10:61610400-61619800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:61610400-61624200	Weak transcription	Thymus	Thymus
19	chr10:61610400-61624400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr10:61610400-61628000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr10:61610800-61624400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr10:61612000-61624000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr10:61612000-61624000	Weak transcription	HMEC	breast
24	chr10:61612200-61622200	Weak transcription	Dnd41	blood
25	chr10:61612200-61623800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr10:61612200-61624800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr10:61612400-61619400	Weak transcription	K562	blood
28	chr10:61612400-61619600	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr10:61612400-61623800	Weak transcription	Liver	Liver
30	chr10:61612400-61624400	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr10:61613200-61624200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr10:61613200-61624200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr10:61613400-61619800	Weak transcription	Primary hematopoietic stem cells	blood
34	chr10:61613600-61624200	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr10:61613800-61620200	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr10:61614200-61629400	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr10:61614400-61624200	Weak transcription	Brain Angular Gyrus	brain
38	chr10:61614600-61618800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr10:61614600-61619800	Weak transcription	Fetal Stomach	stomach
40	chr10:61614600-61623600	Weak transcription	NHEK	skin
41	chr10:61614600-61624400	Weak transcription	Gastric	stomach
42	chr10:61614800-61623600	Weak transcription	Stomach Mucosa	stomach
43	chr10:61614800-61623800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr10:61614800-61624200	Weak transcription	Brain Cingulate Gyrus	brain
45	chr10:61614800-61624200	Weak transcription	Rectal Smooth Muscle	rectum
46	chr10:61615200-61628000	Weak transcription	Esophagus	oesophagus
47	chr10:61615600-61623800	Weak transcription	Primary T cells from cord blood	blood
48	chr10:61616000-61619400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr10:61616000-61624200	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr10:61616000-61624400	Weak transcription	Rectal Mucosa Donor 29	rectum

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