Variant report

Variant	rs2271564
Chromosome Location	chr10:61554006-61554007
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10509114	1.00[CHD][hapmap]
rs10994001	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10994058	0.89[CHD][hapmap]
rs1127327	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12250019	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12250305	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12256258	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12569631	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12571632	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12573796	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17199652	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17199988	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17202345	1.00[CHD][hapmap]
rs17789329	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17790289	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17790901	1.00[CHD][hapmap];0.83[GIH][hapmap];0.81[TSI][hapmap]
rs17791484	0.89[CHD][hapmap]
rs2175913	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2393567	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4597020	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4948238	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs4948367	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4948368	1.00[CHD][hapmap]
rs56232063	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56247613	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72815892	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72815897	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72817909	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72817910	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72817915	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73269619	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2271564	IPMK	cis	cerebellum	SCAN
rs2271564	SLC16A9	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61537600-61582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61540200-61562800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:61545200-61563200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:61545800-61563200	Weak transcription	Spleen	Spleen
5	chr10:61547200-61554800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:61547800-61555000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:61548200-61556200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:61548200-61563200	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr10:61548600-61573000	Strong transcription	Dnd41	blood
10	chr10:61548800-61555400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
11	chr10:61549000-61555200	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr10:61549600-61554400	Strong transcription	Fetal Intestine Large	intestine
13	chr10:61549600-61554800	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr10:61549600-61558400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:61549600-61572000	Strong transcription	Liver	Liver
16	chr10:61549600-61579600	Strong transcription	Primary B cells from cord blood	blood
17	chr10:61549800-61567400	Weak transcription	Fetal Heart	heart
18	chr10:61549800-61569000	Strong transcription	Duodenum Mucosa	Duodenum
19	chr10:61550000-61554400	Strong transcription	Osteobl	bone
20	chr10:61550000-61554600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:61550000-61555000	Strong transcription	Duodenum Smooth Muscle	Duodenum
22	chr10:61550000-61555200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr10:61550000-61555200	Strong transcription	Primary B cells from peripheral blood	blood
24	chr10:61550000-61555200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr10:61550000-61555200	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr10:61550000-61555200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr10:61550000-61555400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr10:61550200-61555000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr10:61550200-61555000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr10:61550200-61555000	Strong transcription	NHEK	skin
31	chr10:61550200-61555200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:61550200-61558200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:61550200-61559600	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr10:61550200-61561800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr10:61550400-61554400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr10:61550400-61554800	Strong transcription	Primary T cells from cord blood	blood
37	chr10:61550400-61555000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr10:61550400-61555000	Strong transcription	GM12878-XiMat	blood
39	chr10:61550400-61555200	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr10:61550400-61555200	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr10:61550400-61555200	Strong transcription	NH-A	brain
42	chr10:61550400-61555400	Strong transcription	Fetal Thymus	thymus
43	chr10:61550400-61566600	Weak transcription	Fetal Brain Male	brain
44	chr10:61550400-61568800	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr10:61550400-61569400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr10:61550600-61554400	Strong transcription	Thymus	Thymus
47	chr10:61550600-61555000	Strong transcription	Stomach Smooth Muscle	stomach
48	chr10:61550800-61554400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr10:61550800-61564000	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr10:61551000-61554600	Strong transcription	HMEC	breast

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