Variant report

Variant	rs17202345
Chromosome Location	chr10:61616384-61616385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61615566..61617712-chr10:61637129..61639962,2	MCF-7	breast:
2	chr10:61616211..61618046-chr10:61619931..61622772,2	K562	blood:
3	chr10:61610249..61613076-chr10:61614715..61617033,2	MCF-7	breast:
4	chr10:61615112..61617171-chr10:61663279..61664781,2	MCF-7	breast:
5	chr10:61612117..61617926-chr10:61664918..61668274,7	MCF-7	breast:
6	chr10:61603038..61604837-chr10:61615583..61618517,2	K562	blood:

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10509114	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10994058	0.89[CHD][hapmap]
rs12573055	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1627130	0.80[EUR][1000 genomes]
rs1627152	0.80[EUR][1000 genomes]
rs1628136	0.80[EUR][1000 genomes]
rs1664258	0.80[EUR][1000 genomes]
rs1664260	0.80[EUR][1000 genomes]
rs1664262	0.80[EUR][1000 genomes]
rs1664263	0.80[EUR][1000 genomes]
rs1664276	1.00[JPT][hapmap]
rs1684902	0.80[EUR][1000 genomes]
rs1684903	0.81[EUR][1000 genomes]
rs17201105	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17202600	1.00[CHB][hapmap];0.90[GIH][hapmap];0.89[ASN][1000 genomes]
rs17790901	0.85[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17791132	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17791436	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17791484	0.85[CHB][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17793021	1.00[JPT][hapmap]
rs1972950	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap]
rs2271561	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2271564	1.00[CHD][hapmap]
rs2440906	0.80[EUR][1000 genomes]
rs2440908	0.80[EUR][1000 genomes]
rs2440909	0.80[EUR][1000 genomes]
rs2440910	0.80[EUR][1000 genomes]
rs2440911	0.80[EUR][1000 genomes]
rs2450468	0.80[EUR][1000 genomes]
rs2450471	0.80[EUR][1000 genomes]
rs3763743	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3763745	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3793866	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4146652	0.80[EUR][1000 genomes]
rs4948249	1.00[JPT][hapmap]
rs4948367	1.00[CHD][hapmap]
rs4948368	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4948369	0.84[ASN][1000 genomes]
rs55826266	0.84[ASN][1000 genomes]
rs55909789	0.89[ASN][1000 genomes]
rs61848700	0.89[ASN][1000 genomes]
rs61848703	0.89[ASN][1000 genomes]
rs61848704	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61848705	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61848728	0.89[ASN][1000 genomes]
rs895243	0.80[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17202345	SLC16A9	cis	cerebellum	SCAN

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61571400-61628000	Weak transcription	Spleen	Spleen
2	chr10:61572400-61618800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:61578000-61623200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:61580200-61624200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr10:61580400-61624200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr10:61583200-61640600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:61591800-61624000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr10:61592600-61616600	Weak transcription	NH-A	brain
9	chr10:61593200-61629400	Weak transcription	Lung	lung
10	chr10:61595800-61624000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:61600000-61616400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr10:61603800-61618400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr10:61605400-61618400	Weak transcription	Fetal Heart	heart
14	chr10:61608000-61617800	Weak transcription	Pancreas	Pancrea
15	chr10:61608000-61618200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr10:61608000-61624000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr10:61608000-61624200	Weak transcription	Right Ventricle	heart
18	chr10:61608000-61637200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:61609200-61617800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr10:61609800-61617000	Weak transcription	Osteobl	bone
21	chr10:61610000-61616600	Weak transcription	NHLF	lung
22	chr10:61610000-61619600	Weak transcription	Fetal Muscle Leg	muscle
23	chr10:61610000-61624200	Weak transcription	Fetal Thymus	thymus
24	chr10:61610200-61618400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr10:61610200-61624000	Weak transcription	Hela-S3	cervix
26	chr10:61610200-61624400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr10:61610400-61617600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr10:61610400-61619800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr10:61610400-61624200	Weak transcription	Thymus	Thymus
30	chr10:61610400-61624400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr10:61610400-61628000	Weak transcription	Fetal Muscle Trunk	muscle
32	chr10:61610800-61624400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr10:61611800-61618000	Enhancers	Brain Anterior Caudate	brain
34	chr10:61612000-61616600	Enhancers	Colon Smooth Muscle	Colon
35	chr10:61612000-61624000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr10:61612000-61624000	Weak transcription	HMEC	breast
37	chr10:61612200-61616600	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr10:61612200-61622200	Weak transcription	Dnd41	blood
39	chr10:61612200-61623800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr10:61612200-61624800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr10:61612400-61619400	Weak transcription	K562	blood
42	chr10:61612400-61619600	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr10:61612400-61623800	Weak transcription	Liver	Liver
44	chr10:61612400-61624400	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr10:61613000-61617600	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr10:61613200-61624200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr10:61613200-61624200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr10:61613400-61619800	Weak transcription	Primary hematopoietic stem cells	blood
49	chr10:61613600-61616400	ZNF genes & repeats	Primary B cells from cord blood	blood
50	chr10:61613600-61624200	Weak transcription	Primary T helper cells fromperipheralblood	blood

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