Variant report

Variant	rs17201105
Chromosome Location	chr10:61581189-61581190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61580220..61581804-chr10:61665581..61667591,2	MCF-7	breast:
2	chr10:61580754..61584536-chr10:61589031..61592298,3	K562	blood:

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10509114	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1171787	0.81[EUR][1000 genomes]
rs12571632	0.86[CHB][hapmap]
rs12573055	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1664276	1.00[JPT][hapmap]
rs17202345	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17202600	0.87[CEU][hapmap];0.85[CHB][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17790289	0.86[CHB][hapmap]
rs17790901	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17791132	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17791436	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17791484	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17793021	1.00[JPT][hapmap]
rs1972950	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2271561	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3763743	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs3763745	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs3793866	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs4948249	1.00[JPT][hapmap]
rs4948367	0.86[CHB][hapmap]
rs4948368	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4948369	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948370	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55826266	1.00[ASN][1000 genomes]
rs55909789	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61848700	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61848703	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61848704	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61848705	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61848728	0.84[ASN][1000 genomes]
rs7475730	0.95[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61537600-61582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61556000-61583800	Strong transcription	Primary B cells from peripheral blood	blood
3	chr10:61565400-61586600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:61567000-61593600	Weak transcription	Small Intestine	intestine
5	chr10:61568200-61582400	Weak transcription	Psoas Muscle	Psoas
6	chr10:61571000-61591200	Weak transcription	NHEK	skin
7	chr10:61571400-61628000	Weak transcription	Spleen	Spleen
8	chr10:61571600-61582800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:61571600-61583600	Weak transcription	GM12878-XiMat	blood
10	chr10:61571600-61585400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr10:61571600-61585800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:61571600-61585800	Weak transcription	Lung	lung
13	chr10:61571600-61585800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr10:61571600-61595800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:61571600-61598400	Weak transcription	Fetal Brain Female	brain
16	chr10:61571600-61609200	Weak transcription	NHLF	lung
17	chr10:61571600-61616000	Weak transcription	Fetal Kidney	kidney
18	chr10:61571800-61583000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr10:61572000-61615000	Weak transcription	Colonic Mucosa	Colon
20	chr10:61572200-61585200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr10:61572400-61589200	Weak transcription	K562	blood
22	chr10:61572400-61591200	Weak transcription	Hela-S3	cervix
23	chr10:61572400-61618800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr10:61572600-61583600	Weak transcription	Brain Hippocampus Middle	brain
25	chr10:61572600-61584200	Weak transcription	Fetal Lung	lung
26	chr10:61572800-61591200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr10:61572800-61591200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr10:61573000-61598400	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr10:61573200-61582000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr10:61573400-61585600	Weak transcription	Adipose Nuclei	Adipose
31	chr10:61573600-61581400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr10:61574200-61586200	Weak transcription	Placenta	Placenta
33	chr10:61574200-61589000	Weak transcription	Liver	Liver
34	chr10:61574200-61589200	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr10:61574600-61588400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr10:61574600-61589000	Weak transcription	HMEC	breast
37	chr10:61574600-61589200	Weak transcription	Fetal Thymus	thymus
38	chr10:61574800-61587400	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr10:61574800-61589400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr10:61575000-61584000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr10:61575800-61582000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr10:61576000-61586800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:61576600-61594400	Weak transcription	Fetal Heart	heart
44	chr10:61578000-61582400	Weak transcription	Pancreas	Pancrea
45	chr10:61578000-61582800	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr10:61578000-61585000	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr10:61578000-61585800	Weak transcription	Gastric	stomach
48	chr10:61578000-61586400	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr10:61578000-61590600	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr10:61578000-61590600	Weak transcription	NH-A	brain

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