Variant report
| Variant | rs1664276 |
|---|---|
| Chromosome Location | chr10:61693239-61693240 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:61664522..61667301-chr10:61690814..61693873,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000108091 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs10509114 | 1.00[JPT][hapmap] |
| rs1171833 | 0.96[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs1183347 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12572828 | 0.83[EUR][1000 genomes] |
| rs12573055 | 0.85[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes] |
| rs1664258 | 0.84[CEU][hapmap] |
| rs1664260 | 0.87[CEU][hapmap] |
| rs1664262 | 0.84[CEU][hapmap] |
| rs1664278 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1664279 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1664280 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1664281 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1684904 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1684916 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs17201105 | 1.00[JPT][hapmap] |
| rs17202345 | 1.00[JPT][hapmap] |
| rs17790901 | 1.00[JPT][hapmap] |
| rs17791132 | 1.00[JPT][hapmap] |
| rs17791436 | 1.00[JPT][hapmap] |
| rs17791484 | 1.00[JPT][hapmap] |
| rs17793021 | 1.00[JPT][hapmap] |
| rs1972950 | 0.88[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes] |
| rs2271561 | 1.00[JPT][hapmap] |
| rs2440906 | 0.81[CEU][hapmap] |
| rs2440910 | 0.80[CEU][hapmap] |
| rs2440916 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2440918 | 1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2450462 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2450463 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2450464 | 0.87[EUR][1000 genomes] |
| rs2450468 | 0.84[CEU][hapmap] |
| rs3763743 | 1.00[JPT][hapmap] |
| rs3763745 | 1.00[JPT][hapmap] |
| rs3793866 | 1.00[JPT][hapmap] |
| rs4948249 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs4948368 | 1.00[JPT][hapmap] |
| rs56221953 | 0.84[EUR][1000 genomes] |
| rs7478076 | 0.81[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs895243 | 0.84[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1800316 | chr10:61639599-61700473 | Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
