Variant report

Variant	rs895243
Chromosome Location	chr10:61636903-61636904
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61633677..61637740-chr10:61638115..61642166,4	K562	blood:
2	chr10:61636496..61638711-chr10:61641760..61644230,2	MCF-7	breast:
3	chr10:61636740..61643413-chr10:61643807..61649213,6	K562	blood:
4	chr10:61634142..61636332-chr10:61636728..61639636,2	MCF-7	breast:
5	chr10:61633143..61635751-chr10:61635824..61637359,2	K562	blood:
6	chr10:61635533..61637804-chr10:61638300..61641205,3	K562	blood:
7	chr10:61628076..61632189-chr10:61632717..61638646,7	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10509114	0.87[MEX][hapmap]
rs1171787	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1171820	0.89[GIH][hapmap]
rs1171833	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap]
rs1180657	0.80[GIH][hapmap]
rs1184089	0.89[GIH][hapmap]
rs12573055	0.95[CEU][hapmap]
rs12776024	0.85[CHB][hapmap]
rs1624715	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1627130	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1627152	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1628136	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1664254	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1664257	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.94[MEX][hapmap];0.95[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1664258	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1664260	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1664261	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1664262	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1664263	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1664276	0.84[CEU][hapmap]
rs1684898	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1684900	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1684902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1684903	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1684914	0.85[JPT][hapmap]
rs17202345	0.80[EUR][1000 genomes]
rs17202600	0.87[MEX][hapmap];0.81[AMR][1000 genomes]
rs17790901	0.81[MEX][hapmap]
rs17791484	0.87[MEX][hapmap]
rs1972950	0.96[CEU][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs2440906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2440908	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2440909	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2440910	0.91[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2440911	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2440918	0.83[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs2450468	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2450469	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2450471	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3763745	0.81[MEX][hapmap]
rs3793866	0.84[CEU][hapmap]
rs4146652	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs895243	SLC16A9	cis	cerebellum	SCAN

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61583200-61640600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61608000-61637200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:61624800-61641000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:61625000-61638800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:61625000-61655400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:61625200-61639200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:61628600-61638600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr10:61630000-61647800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:61633000-61637600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr10:61633000-61638200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr10:61633000-61638400	Weak transcription	Primary T cells from cord blood	blood
12	chr10:61633000-61638400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr10:61633000-61638400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr10:61633000-61639200	Weak transcription	Spleen	Spleen
15	chr10:61633000-61640600	Weak transcription	Gastric	stomach
16	chr10:61633200-61637000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr10:61633200-61638600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr10:61633200-61638600	Weak transcription	A549	lung
19	chr10:61633200-61639400	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr10:61633200-61640600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr10:61633200-61641800	Weak transcription	Lung	lung
22	chr10:61633400-61637000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:61633400-61637000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:61633400-61637200	Weak transcription	Ovary	ovary
25	chr10:61633400-61637400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr10:61633400-61638000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr10:61633400-61638200	Weak transcription	Psoas Muscle	Psoas
28	chr10:61633400-61638600	Weak transcription	Thymus	Thymus
29	chr10:61633400-61638800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr10:61633400-61639400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr10:61633400-61643200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr10:61633400-61645200	Weak transcription	Fetal Thymus	thymus
33	chr10:61633400-61647800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr10:61633400-61647800	Weak transcription	Fetal Muscle Leg	muscle
35	chr10:61633400-61647800	Weak transcription	Fetal Stomach	stomach
36	chr10:61633400-61648600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr10:61633600-61637400	Weak transcription	NHDF-Ad	bronchial
38	chr10:61633600-61645200	Weak transcription	Brain Germinal Matrix	brain
39	chr10:61633800-61638400	Weak transcription	Liver	Liver
40	chr10:61634000-61637000	Weak transcription	K562	blood
41	chr10:61634000-61637200	Weak transcription	Right Atrium	heart
42	chr10:61634000-61637600	Weak transcription	Fetal Heart	heart
43	chr10:61634000-61640400	Weak transcription	Duodenum Mucosa	Duodenum
44	chr10:61634000-61645000	Weak transcription	Stomach Smooth Muscle	stomach
45	chr10:61634000-61645600	Weak transcription	Fetal Lung	lung
46	chr10:61634000-61646800	Weak transcription	Adipose Nuclei	Adipose
47	chr10:61634200-61637400	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr10:61634400-61637200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr10:61634400-61637400	Weak transcription	Rectal Smooth Muscle	rectum
50	chr10:61634400-61638000	Weak transcription	Aorta	Aorta

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